View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6163_low_3 (Length: 345)
Name: NF6163_low_3
Description: NF6163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6163_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10072424 - 10072634
Alignment:
| Q |
1 |
gttgaatgaatggaatgcaagggttgcgataaacctaatttatagacnnnnnnnncatgaaacatattttaaagaaacttataagttaatattaaagaaa |
100 |
Q |
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| T |
10072424 |
gttgaatgaatggaatgcaagggttgcgataaacctaatttatagacaaaaaa--catgaaacatattttaaagaaacttataagttaatattaaagaaa |
10072521 |
T |
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| Q |
101 |
cttatttgatttatatataagttaatatattcaccaaaggtcaaaagtctttaaccatatttttcttacttcacacgttaaatggtacaagatttttaat |
200 |
Q |
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| T |
10072522 |
cttatttgatttatatataagttaatatattcaccaaaggtcaaaagtctttaaccatatttttcttacttcacacgttaaagggtacaagatttttaat |
10072621 |
T |
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| Q |
201 |
tgttgtatagcac |
213 |
Q |
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||||||||||||| |
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| T |
10072622 |
tgttgtatagcac |
10072634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 10084134 - 10084252
Alignment:
| Q |
56 |
catgaaacatattttaaagaaacttataagttaat-attaaagaaacttatttgatttatatataagttaatatattcacc-aaaggtcaaaagtcttta |
153 |
Q |
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| T |
10084134 |
catgcaacatctttaaaagaaactattaaattaattattaaagaaacttattttattt-tataaaag---atatattcaccaaaaggtcaaaaatcttta |
10084229 |
T |
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| Q |
154 |
accat-atttttcttacttcaca |
175 |
Q |
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|||| |||||||||||||||| |
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| T |
10084230 |
tccatcttttttcttacttcaca |
10084252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 10072720 - 10072755
Alignment:
| Q |
299 |
aaaagattcttttgcatgtgttcttgttgttgttga |
334 |
Q |
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| T |
10072720 |
aaaagattcttttgcacgtgttcttgttgttgttga |
10072755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 10079935 - 10080056
Alignment:
| Q |
56 |
catgaaacatattttaaagaaacttataagttaat-attaaagaaacttatttgatttatatataagtta--atatattcacc-aaaggtcaaaagtctt |
151 |
Q |
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|||| ||||| ||| ||||||||| ||| ||||| ||||||||||||||||| |||| ||||| ||| ||||||||||| ||||||||||| |||| |
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| T |
10079935 |
catgcaacatctttaaaagaaactattaaattaattattaaagaaacttattttattt---tataatttaagatatattcaccaaaaggtcaaaaatctt |
10080031 |
T |
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| Q |
152 |
taaccat-atttttcttacttcaca |
175 |
Q |
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|| |||| |||||||||||||||| |
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| T |
10080032 |
tatccatcttttttcttacttcaca |
10080056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 10104213 - 10104250
Alignment:
| Q |
293 |
ttgaagaaaagattcttttgcatgtgttcttgttgttg |
330 |
Q |
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| T |
10104213 |
ttgaagaaaagattcatttgcatgtgttgttgttgttg |
10104250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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