View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6164_high_1 (Length: 517)
Name: NF6164_high_1
Description: NF6164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6164_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 4947005 - 4947504
Alignment:
| Q |
1 |
tcactttgatgacaacgaaaccacaccaaattgtttcccagttgaaactcatcctgatgatcaaacaaggccaaccaagaagatcaagacatcgagaacc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4947005 |
tcactttgatgacaacgaaacgacaccaaattgtttcccagttgaaactcatcctgatgatcaaacaaggccaaccaagaagatcaagacatcgataacc |
4947104 |
T |
|
| Q |
101 |
ccttcttcccagtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaagcaattttataaccttgattattcagatgtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947105 |
ccttcttcccagtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaagcaattttataaccttgattattcagatgtaa |
4947204 |
T |
|
| Q |
201 |
aacctaaagtcgagaaaaggtttaatgaaaacaaggattttctaccagctttggtttctcaaggttcttatgaagatcaaaaaatattttccaattatga |
300 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947205 |
aacctaaagtcgggaaaaggtgtaatgaaaacaaggattttctaccagctttggtttctcaaggttcttatgaagatcaaaaaatattttccaattatga |
4947304 |
T |
|
| Q |
301 |
taaccaagcgaatcagaccagaaacacttctcaagctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947305 |
taaccaagcgaatcagaccagaaacactgctcaagctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctt |
4947404 |
T |
|
| Q |
401 |
tcagccattgttcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgtaactccattcaaaccatttatatatcaacatat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947405 |
tcagccattgttcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgtaactccattcaaaccatttatatatcaacatat |
4947504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 40441933 - 40441838
Alignment:
| Q |
335 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
430 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||||||||||| || || ||||| || ||||| | ||| ||||||| ||||| |||||| |
|
|
| T |
40441933 |
gctcgagatcatgttatcgccgaaagaaaacgaagggaaaagcttagccagagattcattgcactttcctctattcttcctggactcaaaaaggta |
40441838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 40426845 - 40426750
Alignment:
| Q |
335 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
430 |
Q |
| |
|
|||| ||| ||||| ||||||||||||| ||||||||||||||||| || || ||||| |||||||| | || ||||||| ||||| |||||| |
|
|
| T |
40426845 |
gctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcatttctctttcatctcttcttcctggactcaaaaaggta |
40426750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University