View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6164_high_3 (Length: 268)
Name: NF6164_high_3
Description: NF6164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6164_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 39912310 - 39912188
Alignment:
| Q |
78 |
tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcat |
177 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39912310 |
tgatgattattcaacagatgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcat |
39912211 |
T |
|
| Q |
178 |
accggctcgattccagcgctttt |
200 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39912210 |
accggctcgattccagcgctttt |
39912188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 38967894 - 38968016
Alignment:
| Q |
78 |
tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcat |
177 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
38967894 |
tgatgattattcaaccgaggtgttatttttgtaagtttgatttctctgtttgattgttaatatgtgttatgtaggaagaggttgctaaagagtttggcat |
38967993 |
T |
|
| Q |
178 |
accggctcgattccagcgctttt |
200 |
Q |
| |
|
||| |||| |||||||||||||| |
|
|
| T |
38967994 |
accagctcaattccagcgctttt |
38968016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39912429 - 39912348
Alignment:
| Q |
1 |
taaaatattaaaacatgatgctttagttggaaggagaaaaaagtcgtcatttgaataatctgtggtttttatgcttttgatg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39912429 |
taaaatattaaaacatgatgctttagttggaaggagaaaaaagtcgtcatatgaataatctgtggtttttatgcttttgatg |
39912348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 39865732 - 39865608
Alignment:
| Q |
78 |
tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatat--gtgatatgtaggaagaggttgccaaagagttcggc |
175 |
Q |
| |
|
|||||||| |||||| | ||| ||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||| || |
|
|
| T |
39865732 |
tgatgatttttcaacggatgtattatttttgtatgtttgatttttctgttttattgctaatatatgtgatatgtaggaagaggttgctaaagagttttgc |
39865633 |
T |
|
| Q |
176 |
ataccggctcgattccagcgctttt |
200 |
Q |
| |
|
||||| |||| |||||||||||||| |
|
|
| T |
39865632 |
ataccagctcaattccagcgctttt |
39865608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 37467156 - 37467036
Alignment:
| Q |
81 |
tgattattcaacaggtgtgttatttttgta-agtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcatac |
179 |
Q |
| |
|
||||||||||| || |||||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37467156 |
tgattattcaatagctgtgttattttttccgagtttggtatttctgtttgattgctaatctgtgatatgtaggaagaggttgctaaagagttcggcatac |
37467057 |
T |
|
| Q |
180 |
cggctcgattccagcgctttt |
200 |
Q |
| |
|
| | || |||||||||||||| |
|
|
| T |
37467056 |
ctgttcaattccagcgctttt |
37467036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 39912087 - 39912025
Alignment:
| Q |
197 |
ttttcaatattattttgctcatattacccccttcaagcttcttattctgtgaccttttcatttc |
260 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39912087 |
ttttgaatattattttgctcatat-acccccttcaagcttcttattctgtgaccttttcatttc |
39912025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 39848633 - 39848531
Alignment:
| Q |
98 |
tgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcataccggctcgattccagcgct |
197 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||| | ||||||||||||||||| | ||||| |||||||| |||||||| |||| ||||||||||| |
|
|
| T |
39848633 |
tgttatttttgtaagttggatttttacgtttgattgattttatgtgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattccagcgct |
39848534 |
T |
|
| Q |
198 |
ttt |
200 |
Q |
| |
|
||| |
|
|
| T |
39848533 |
ttt |
39848531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 39899378 - 39899295
Alignment:
| Q |
3 |
aaatattaaaa-catgatgctttagttggaaggagaaaaaag----tcgtcatttgaataatctgtggtttttatgcttttgat |
81 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
39899378 |
aaatattaaaagcatgatgctttagttgaaagaagaaaaaaagtattcgtcatatgaataatatgtggtttttatgcttttgat |
39899295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 38971855 - 38971901
Alignment:
| Q |
195 |
gcttttcaatattattttgctcatattacccccttcaagcttcttatt |
242 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
38971855 |
gcttttcaatatgattttgctcata-tacccccttcaaacttcttatt |
38971901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 39735112 - 39735199
Alignment:
| Q |
110 |
aagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcataccggctcgattccagcgctttt |
200 |
Q |
| |
|
|||||||||||| |||| |||||| |||| ||||||||||| || | |||| |||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
39735112 |
aagtttgatttt-ctgtttgattgttaat--gtgatatgtagaaattgcttgctaaagagtttgacataccggctggattccagcgctttt |
39735199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 39858185 - 39858126
Alignment:
| Q |
197 |
ttttcaatattattttgctcatattacccccttcaagcttcttattctgtgaccttttcat |
257 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||| |||| | |||| ||||||| |
|
|
| T |
39858185 |
ttttcaatattgttttgctcata-tatccccttcaagcttcatattttatgactttttcat |
39858126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University