View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6164_low_2 (Length: 473)
Name: NF6164_low_2
Description: NF6164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6164_low_2 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: scaffold0290 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 6145 - 6603
Alignment:
| Q |
1 |
aaagggttgggacatgaatggtgtaggttgagcaatagggcatgcctttgccttttatggtattgtttggttttaatttggtcatgacttcttgatgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145 |
aaagggttgggacatgaatggtgtaggttgagcaatagggcatgcctttgccttttatagtattgtttggttttaatttggtcatgacttcttgatgtaa |
6244 |
T |
|
| Q |
101 |
actcctgaaagcgtggaattaattacgtacatgctcacattgannnnnnnnnattat------tgggtaacccttggaggttgggctaaaaattaaataa |
194 |
Q |
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| T |
6245 |
actcctgaaagcgtggaattaattacgtacatgctcacattgattttttatttttatttttattgggtaacccttggaggttgggctaaaaattaaataa |
6344 |
T |
|
| Q |
195 |
aatatggttaggaattattttatctatacgaatcgaattcaatctttataaacaattcttctttactaaattatttgagtcaaattatttggttaaatgt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6345 |
aatatggttaggaattattttatctatacgaatcgaattcaatcttcataaacaattcatctttactaaattatttgagtcaaattatttggttaaatgt |
6444 |
T |
|
| Q |
295 |
ctaaataggatactttcttacctttcgtatctttacaattcgaattaaatatcaaaatattattacctatatcatccccactacaaaacaataaatgcaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6445 |
ctaaataggatactttcttacctttcgtatctttacaactcgaattaaatatgaaaatattattacctatatcatccccactacaaaacaataaatgcaa |
6544 |
T |
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| Q |
395 |
atatgattttgtaaatattatacaaagtggaaccttatttgtattttgaatggtattct |
453 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6545 |
atatgattttgtaaatgttatacaaagtggaaccttatttgtattttgaatggtattct |
6603 |
T |
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