View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6164_low_3 (Length: 388)
Name: NF6164_low_3
Description: NF6164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6164_low_3 |
 | |
|
| [»] scaffold0148 (1 HSPs) |
| | |
|
| [»] scaffold0280 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0148 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 27740 - 27369
Alignment:
| Q |
1 |
atttgtgccatgggatgtgtccacagt------gccaggcttactcatatgctcaggtccctgataagcagctgcgtggtcttattccttcaaactgttg |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27740 |
atttgtgccatgggatgtgtccacagtcacagtgccaggcttactcatatgctcaagtccctgataagcagcagcgtggtcttattccttcaaactgttg |
27641 |
T |
|
| Q |
95 |
gatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagacataggtatg |
194 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27640 |
gatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagacataggtatg |
27541 |
T |
|
| Q |
195 |
catatgatgattaaattagagacatatttctctcttcnnnnnnnnnnatataaaattagaaacaaattcatgattctgaagattccttttattcattttt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27540 |
catatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattccttttattcattttt |
27441 |
T |
|
| Q |
295 |
gtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggaccc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440 |
gtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggaccc |
27369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
82 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
181 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
|
| Q |
182 |
agacataggtatgcatatgatgattaaattaga |
214 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| |
|
|
| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 2307 - 2212
Alignment:
| Q |
271 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggaccc |
366 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagaccc |
2212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University