View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6164_low_4 (Length: 320)

Name: NF6164_low_4
Description: NF6164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6164_low_4
NF6164_low_4
[»] chr8 (4 HSPs)
chr8 (14-313)||(14759197-14759496)
chr8 (14-320)||(26972735-26973041)
chr8 (8-120)||(23133137-23133249)
chr8 (218-313)||(23133347-23133442)
[»] chr4 (3 HSPs)
chr4 (8-272)||(54477963-54478220)
chr4 (14-93)||(14307291-14307370)
chr4 (8-81)||(46785030-46785103)
[»] scaffold0036 (1 HSPs)
scaffold0036 (47-285)||(68173-68411)
[»] chr2 (8 HSPs)
chr2 (8-114)||(16321935-16322041)
chr2 (8-120)||(14654232-14654344)
chr2 (23-79)||(26790842-26790898)
chr2 (17-84)||(19264932-19264999)
chr2 (7-81)||(39012049-39012123)
chr2 (17-84)||(40327694-40327761)
chr2 (17-63)||(177030-177076)
chr2 (8-84)||(42403772-42403848)
[»] chr7 (1 HSPs)
chr7 (7-114)||(16770518-16770625)
[»] chr3 (7 HSPs)
chr3 (13-120)||(26433255-26433362)
chr3 (218-313)||(11896438-11896533)
chr3 (7-81)||(3660169-3660243)
chr3 (17-81)||(17718922-17718986)
chr3 (17-81)||(19020151-19020215)
chr3 (17-117)||(38647746-38647846)
chr3 (35-120)||(11896631-11896716)
[»] scaffold0214 (1 HSPs)
scaffold0214 (7-81)||(8486-8560)
[»] chr1 (2 HSPs)
chr1 (8-120)||(20284332-20284444)
chr1 (218-313)||(20284139-20284234)
[»] chr5 (3 HSPs)
chr5 (17-72)||(6641580-6641635)
chr5 (8-63)||(23621176-23621231)
chr5 (7-81)||(23944537-23944611)
[»] chr6 (1 HSPs)
chr6 (7-117)||(35232972-35233082)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 14759496 - 14759197
Alignment:
Q  14 atatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttgg 113  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14759496 atatgccaggattgtttaaaaaagatgtagtgaaagccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttgg 14759397  T
Q  114 tgattggaaagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaatttctgtcatggttaggttcgataccactgaagaa 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14759396 tgattggagagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaatttctgtcatggttaggttcgataccactgaagaa 14759297  T
Q  214 agctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagccgatggacccgatttttctttctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14759296 agctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagcctatggacccgatttttctttctt 14759197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 26973041 - 26972735
Alignment:
Q  14 atatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttgg 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26973041 atatgccagtattgtttaaaaaagatgcagtgaaagccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctcttttgg 26972942  T
Q  114 tgattggaaagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaatttctgtcatggttaggttcgataccactgaagaa 213  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26972941 tgattggagagagtaaagagagcttccaatcttcatctatggtagggtggatgccttcattgaaacttctgtcatggttaggttcgataccactgaagaa 26972842  T
Q  214 agctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagccgatggacccgatttttctttctt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  26972841 agctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgaagcctatggatccgatttttctttctt 26972742  T
Q  314 ttgatga 320  Q
     ||||||    
T  26972741 ctgatga 26972735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 23133137 - 23133249
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||| ||| |||||||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||| || ||||| |||| | | || || |    
T  23133137 ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcagcataaacttcat 23133236  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  23133237 ttttggtgattgg 23133249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 23133347 - 23133442
Alignment:
Q  218 ttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagccgatggacccgatttttctttctt 313  Q
    ||||| |||||||||||||||| ||||||||| ||||||||  | ||||| |||||||| ||||| || || | ||| || |||||| ||||||||    
T  23133347 ttgaagtaattttgtgcttcttgttggagagtatcactatcggaagaccaagtaccacaggggagctgaagtctatgtactcgatttctctttctt 23133442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 54477963 - 54478220
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||| ||| ||||| |||||||| || |||||| |||| || ||||| ||||| | |||||| |||||||||||||| ||||| | || ||| |||||||    
T  54477963 ccaacaatgtgccaatattgtttgaagaagatgtagtggaagccatctgggcctgaggctttatagggcttcatagagttaagggaagcaaacacctctt 54478062  T
Q  108 ttttggtgattggaaagagtaaagagagcttcccatcgtcatctatggtagggtggatgccttcattgaaatttctgtcatggttaggttcgataccact 207  Q
    |||||||||||||  ||  |||||| ||||| || ||||       |  |||||| || ||  |||||||  ||| ||||||||| |||| | | ||||     
T  54478063 ttttggtgattggggaggttaaagaaagcttaccctcgt-------gtaagggtgaataccaacattgaagcttcggtcatggtttggttggttgccacc 54478155  T
Q  208 gaagaaagctttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtac 272  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  54478156 gaagaaagtcttgaaataattttgagcttcttcttggagagtgtcactatcataggaccaggtac 54478220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 14307370 - 14307291
Alignment:
Q  14 atatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagc 93  Q
    |||||||| |||||||| || || ||||| ||||||||||| ||||||| || |||||| || |||||||| || |||||    
T  14307370 atatgccaatattgtttgaagaaaatgcattgaaaaccatctgggccagaggatttgtaaggtttcatagagttcagagc 14307291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 46785030 - 46785103
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||| ||| |||||||||||||| || |||||||| || |||||||| || ||||| | ||||||||| |||||    
T  46785030 ccaacaatgtgccagtattgtttgaagaagatgcattggaaaccatccggaccaggagatttgtagggtttcat 46785103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 285
Target Start/End: Complemental strand, 68411 - 68173
Alignment:
Q  47 aaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttggtgattggaaagagtaaagagagcttcccatcgt 146  Q
    ||||||| ||||||||||||||||| |||||| ||||  ||||| ||||  || || ||   ||||||||||||| |   |||||| |  |||||||||     
T  68411 aaaccattggggccaggggctttgttgggctttatagggttaagggcagcgaacacttcaggtttggtgattggagaagttaaagaaattttcccatcgg 68312  T
Q  147 catctatggtagggtggatgccttcattgaaatttctgtcatggttaggttcgataccactgaagaaagctttgaaataattttgtgcttcttcttggag 246  Q
    |||| |||| ||||||   |||||||||||||  ||  ||||||||||||| | | ||||||||||||   |||||||| ||||| || || ||||| ||    
T  68311 catcaatggaagggtgagcgccttcattgaaagatcgatcatggttaggttggttgccactgaagaaattcttgaaatagttttgggcctcctcttgaag 68212  T
Q  247 agtgtcactatcatatgaccatgtaccacaagggagttg 285  Q
    | |||| |||||| | ||||| |||||||||||||||||    
T  68211 aatgtcgctatcagaggaccaagtaccacaagggagttg 68173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 16322041 - 16321935
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||| ||| ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| || || || |||| ||| |||||||    
T  16322041 ccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagttgagggcagcaaaaacctctt 16321942  T
Q  108 ttttggt 114  Q
    |||||||    
T  16321941 ttttggt 16321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 14654232 - 14654344
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||||||||||| |||| || || || |||||||| || |||||||| || ||||||||||||||||||||||| || ||||| |||| | | || || |    
T  14654232 ccaataatatgctagtactgcttgaagaagatgcaatggaaaccatctggaccaggggctttgtagggcttcatggagttaagggcagcataaacttcat 14654331  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  14654332 ttttggtgattgg 14654344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 26790898 - 26790842
Alignment:
Q  23 tattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttc 79  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  26790898 tattgtttaaaaaaaatacaatgaaaaccatcggggccaggggctttgtagggcttc 26790842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 19264999 - 19264932
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    |||||||||||||| || || ||||| ||||| ||||| || |||||||||||||| |||||||||||    
T  19264999 tgccagtattgtttgaagaaaatgcaatgaaacccatcaggaccaggggctttgtatggcttcataga 19264932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 39012123 - 39012049
Alignment:
Q  7 tccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||||||||||||| |||||    
T  39012123 tccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctttgtagggtttcat 39012049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 40327761 - 40327694
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    |||||||||||||| || || ||||| ||||| || || || |||||||||||||| |||||||||||    
T  40327761 tgccagtattgtttgaagaaaatgcaatgaaacccgtcaggaccaggggctttgtaaggcttcataga 40327694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 177076 - 177030
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccagg 63  Q
    ||||| |||||||| ||||||||||| ||||||||||| ||||||||    
T  177076 tgccaatattgtttgaaaaagatgcattgaaaaccatctgggccagg 177030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 42403772 - 42403848
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcataga 84  Q
    |||| ||| ||||| |||||||| || |||||||| || |||||||| || ||||| || ||||| |||||||||||    
T  42403772 ccaacaatgtgccaatattgtttgaagaagatgcaatggaaaccatcaggaccaggtgccttgtaaggcttcataga 42403848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 16770518 - 16770625
Alignment:
Q  7 tccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctct 106  Q
    ||||||||| |||||||||||||| ||||| ||||| || |||||||| || || || |||||||| || |||||||| ||||| |||| || ||| |||    
T  16770518 tccaataatgtgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggtgctttgtaaggtttcatagagttaagggcagcaaggacttct 16770617  T
Q  107 tttttggt 114  Q
    ||||||||    
T  16770618 tttttggt 16770625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 26433255 - 26433362
Alignment:
Q  13 aatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttg 112  Q
    |||||||||||| ||||| || |||||||| || |||||||| || |||||||||||||| |||||||| || ||||| |||| | | || || |||||     
T  26433255 aatatgccagtactgtttgaagaagatgcaatggaaaccatcaggaccaggggctttgtaaggcttcatggagttaagggcagcataaacttcattttta 26433354  T
Q  113 gtgattgg 120  Q
    ||||||||    
T  26433355 gtgattgg 26433362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 11896533 - 11896438
Alignment:
Q  218 ttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagccgatggacccgatttttctttctt 313  Q
    ||||| |||||||||||||||| ||||||||| ||||||||  | ||||| |||||||| ||||| || || | ||| || |||||| ||||||||    
T  11896533 ttgaagtaattttgtgcttcttgttggagagtatcactatcggaagaccaagtaccacaggggagctgaagtctatgtactcgatttctctttctt 11896438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 3660169 - 3660243
Alignment:
Q  7 tccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||||||||||||| |||||    
T  3660169 tccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctttgtagggtttcat 3660243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 17718922 - 17718986
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| ||||||||    
T  17718922 tgccagtactgtttgaaaaagatacattgaaaaccatctggaccgggggctttgtacggcttcat 17718986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 19020151 - 19020215
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    |||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| ||||||||    
T  19020151 tgccagtactgtttgaaaaagatacattgaaaaccatctggaccgggggctttgtacggcttcat 19020215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 38647746 - 38647846
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttggtga 116  Q
    ||||| |||||||| || ||||| || || |||||||| ||||| || |||||||| || ||||| || ||||| |||| ||| ||||| ||||||||||    
T  38647746 tgccaatattgtttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaagtgcagcaaacacctcatttttggtga 38647845  T
Q  117 t 117  Q
    |    
T  38647846 t 38647846  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 11896716 - 11896631
Alignment:
Q  35 aagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctcttttttggtgattgg 120  Q
    |||||||| || |||||||| || ||||||||||||||||| ||||| || ||||| |||  | | || || ||||||||||||||    
T  11896716 aagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcaacataaacttcatttttggtgattgg 11896631  T

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Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 8560 - 8486
Alignment:
Q  7 tccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||| ||| |||||  |||||||||| || || || ||||||||||| ||||||||||||||||||||||||||    
T  8560 tccaacaatgtgccaaaattgtttaaagaaaatacaatgaaaaccatcagggccaggggctttgtagggcttcat 8486  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 20284444 - 20284332
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctctt 107  Q
    |||| ||| |||||||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||| || ||||| |||| | | || || |    
T  20284444 ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggcagcataaacttcat 20284345  T
Q  108 ttttggtgattgg 120  Q
    |||||||||||||    
T  20284344 ttttggtgattgg 20284332  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 20284234 - 20284139
Alignment:
Q  218 ttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagccgatggacccgatttttctttctt 313  Q
    ||||| |||||||||||||||| ||||||||| ||||||||  | ||||| |||||||| ||||| || || | ||| || |||||| ||||||||    
T  20284234 ttgaagtaattttgtgcttcttgttggagagtatcactatcggaagaccaagtaccacaggggagctgaagtctatgtactcgatttctctttctt 20284139  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6641580 - 6641635
Alignment:
Q  17 tgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgta 72  Q
    |||||||||||| | || ||  |||||||||||||||| |||||||||||||||||    
T  6641580 tgccagtattgtatgaagaaattgcagtgaaaaccatcagggccaggggctttgta 6641635  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 23621176 - 23621231
Alignment:
Q  8 ccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccagg 63  Q
    |||| ||||||||| |||||||||||||||||||| || || ||||| ||||||||    
T  23621176 ccaacaatatgccaatattgtttaaaaaagatgcaatggaagccatctgggccagg 23621231  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 23944611 - 23944537
Alignment:
Q  7 tccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcat 81  Q
    ||||| ||| || |||||||| || || ||||| || ||||||||||| ||||||||||||||| |||| |||||    
T  23944611 tccaacaatgtgtcagtattgcttgaagaagatacattgaaaaccatctgggccaggggctttgaagggtttcat 23944537  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 35233082 - 35232972
Alignment:
Q  7 tccaataatatgccagtattgtttaaaaaagatgcagtgaaaaccatcggggccaggggctttgtagggcttcatagaattaagagcagtaaagacctct 106  Q
    ||||||||||||||| ||||| || || || ||||| || |||||||| || || || ||||||||||| ||||| || || || |||| |||||| ||     
T  35233082 tccaataatatgccaatattgcttgaagaatatgcaatggaaaccatctggtcctggagctttgtagggtttcatggagtttagggcagcaaagacttca 35232983  T
Q  107 tttttggtgat 117  Q
    ||||| |||||    
T  35232982 tttttagtgat 35232972  T

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