View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6164_low_5 (Length: 277)
Name: NF6164_low_5
Description: NF6164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6164_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 50385251 - 50385001
Alignment:
| Q |
18 |
aaaccatactcactctgtgaaaaactaaccttcttctgaattatgatcataaccagcaagaatccagcaagaccaagtgagatatacaagaaattataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50385251 |
aaaccatactcactctgtgaaaaactaaccttcttctgaattatgatcataaccaacaagaatccagcaagaccaagtgagatatacaagaaattataaa |
50385152 |
T |
|
| Q |
118 |
aaaccttaagctcattaacttgtcgaacaggtttcatatatcgaatggttcgaagaaaagcaaatgaaatagcagcaggaagccaaccaataaacaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50385151 |
aaaccttaagctcattaacttgtcgaacaggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaat |
50385052 |
T |
|
| Q |
218 |
caaagcctttgtgtcatcataataaatagcagagtatagctgtgtgatgat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50385051 |
caaagcctttgtgtcatcataataaatagcagagtaaagctgtgtgatgat |
50385001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 50393670 - 50393423
Alignment:
| Q |
18 |
aaaccatactcactctgtgaaaaactaaccttcttctgaattatgatcataaccagcaagaatccagcaagaccaagtgagatatacaagaaattataaa |
117 |
Q |
| |
|
|||||| |||||| ||||| |||||| ||||||||| ||||| |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
50393670 |
aaaccaaactcaccctgtgtgaaactactcttcttctggattataatcataaccaacaagaatccagcaaggccaagtgaaacatacaagaaattataaa |
50393571 |
T |
|
| Q |
118 |
aaaccttaagctcattaacttgtcgaacaggtttcatatatcgaatggttcgaagaaaagcaaatgaaatagcagcaggaagccaaccaataaacaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50393570 |
aaaccttaagctcattaacttgtcgaacaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaat |
50393471 |
T |
|
| Q |
218 |
caaagcctttgtgtcatcataataaatagcagagtatagctgtgtgat |
265 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
50393470 |
caaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgat |
50393423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 66 - 268
Target Start/End: Complemental strand, 50390348 - 50390146
Alignment:
| Q |
66 |
ataaccagcaagaatccagcaagaccaagtgagatatacaagaaattataaaaaaccttaagctcattaacttgtcgaacaggtttcatatatcgaatgg |
165 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
50390348 |
ataaccaacaagaaaccagcaagagcaagtgagatgtacaagaaattataaaaaaccttaagctcattgacttgtcgaacaggttttatataccgaatgg |
50390249 |
T |
|
| Q |
166 |
ttcgaagaaaagcaaatgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtatagctgtgtgat |
265 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||| || |||||||| |
|
|
| T |
50390248 |
ttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgat |
50390149 |
T |
|
| Q |
266 |
gat |
268 |
Q |
| |
|
||| |
|
|
| T |
50390148 |
gat |
50390146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 50407154 - 50407036
Alignment:
| Q |
147 |
ggtttcatatatcgaatggttcgaagaaaagcaaatgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatag |
246 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
50407154 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
50407055 |
T |
|
| Q |
247 |
cagagtatagctgtgtgat |
265 |
Q |
| |
|
|||| || || |||||||| |
|
|
| T |
50407054 |
cagaataaagttgtgtgat |
50407036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 24224047 - 24223939
Alignment:
| Q |
161 |
aatggttcgaagaaaagcaaatgaaatagcagcagg-aagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtatagctg |
259 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| || | |||||| | || |||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
24224047 |
aatggttcgaagaaaaacaaaagaaatagcaacatgtaagccagcttatgaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttg |
24223948 |
T |
|
| Q |
260 |
tgtgatgat |
268 |
Q |
| |
|
||||||||| |
|
|
| T |
24223947 |
tgtgatgat |
24223939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University