View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6165_high_5 (Length: 316)
Name: NF6165_high_5
Description: NF6165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6165_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 34541763 - 34541476
Alignment:
| Q |
19 |
gtacttccactctctctaatcttatcttcctattccannnnnnncaactaattttcgtttcattttgcttattatagtcgaggtttgcttaaaaccttcc |
118 |
Q |
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| T |
34541763 |
gtacttccactctctctaatcttatcttcctattccaattttttcaactaattttcgtttcattttgcttattatagtcgaggtttgcttaaaaccttcc |
34541664 |
T |
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| Q |
119 |
agcacagcttccattcacgatgttcgttccgccgttgaggggtaataatctatttctcttcattttattttcttatagtttctagggtttatacaaatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34541663 |
agcacagcttccattcacgatgttcgttccgccgttgaggggtaataatctatttctcttcattttattttcttatagtttctagggtttatacaaatta |
34541564 |
T |
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| Q |
219 |
attttctttgcggttttagttttgtgtgaggctaattcgagactttaattcaactaattttaattattctatcgggttctgtgctgct |
306 |
Q |
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||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34541563 |
tttttctttgtggttttagttttgtgtgagggtaattcgggactttaattcaactaattttaattattctatcgggttctgtgttgct |
34541476 |
T |
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