View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6165_high_6 (Length: 241)
Name: NF6165_high_6
Description: NF6165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6165_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27442190 - 27441950
Alignment:
| Q |
1 |
catggtatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaatatt |
100 |
Q |
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| T |
27442190 |
catggtatggacttgcctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaaaatt |
27442091 |
T |
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| Q |
101 |
aggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatat |
200 |
Q |
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| T |
27442090 |
aggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatat |
27441991 |
T |
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| Q |
201 |
tattttgatgctcataagatgcttagtaaaattcatctctg |
241 |
Q |
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| T |
27441990 |
tattttgatgctcataagatgcttagtaaaattcatctctg |
27441950 |
T |
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