View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6165_low_1 (Length: 623)

Name: NF6165_low_1
Description: NF6165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6165_low_1
NF6165_low_1
[»] chr1 (13 HSPs)
chr1 (18-610)||(34904826-34905420)
chr1 (251-525)||(34896187-34896461)
chr1 (256-486)||(28545552-28545778)
chr1 (126-254)||(34896486-34896617)
chr1 (18-131)||(34896755-34896868)
chr1 (253-447)||(34910064-34910251)
chr1 (253-487)||(28543315-28543544)
chr1 (149-254)||(34910281-34910386)
chr1 (65-131)||(34910499-34910565)
chr1 (550-602)||(34896122-34896174)
chr1 (34-131)||(28542970-28543066)
chr1 (554-590)||(34915983-34916019)
chr1 (149-179)||(28543202-28543232)


Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Complemental strand, 34905420 - 34904826
Alignment:
Q  18 agtgcttagccaattcttttatgaatgatatgcaaaaataactgtcaagctttgctaaatctgaatttattattattgtattttctttcttctctaatga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905420 agtgcttagccaattcttttatgaatgatatgcaaaaataactgtcaagctttgctaaatctgaatttattattattgtattttctttcttctctaatga 34905321  T
Q  118 agatttcatgtgaaacacttaagaacgaga---gtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttt 214  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905320 agatttcatgtgaaacacttaagaacgagaacagtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttt 34905221  T
Q  215 tgaagacctaaagattacatgacaactgagatttgtattatctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgttttta 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905220 tgaagacctaaagattacatgacaactgagatttgtat-atctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgttttta 34905122  T
Q  315 tattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggtttt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905121 tattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggtttt 34905022  T
Q  415 ggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtattcggaa 514  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34905021 ggctctaatcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtatttggaa 34904922  T
Q  515 gcagcatatttacaccttttggcgcttcatcccagccagcatttggttcgacatgcactcctgcatttggtgctactagcacccctgcgtctgcct 610  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34904921 gcagcatattaacaccttttggcgcttcatcccagccagaatttggttcgacatgcactcctgcatttggtgctactagcacccctgcgtctgcct 34904826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 251 - 525
Target Start/End: Complemental strand, 34896461 - 34896187
Alignment:
Q  251 attatctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactga 350  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34896461 attatctaataatggtaatcattagcatcttttggcttacttttctgcctttttattgtttttatattattagattttgcagttttctaattctaactga 34896362  T
Q  351 gaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagt 450  Q
    || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34896361 gatccaacttttctcctttataggatcatcagtgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagt 34896262  T
Q  451 gccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtattcggaagcagcatattt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  34896261 gccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagcatttggaagcagcatattt 34896187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 256 - 486
Target Start/End: Original strand, 28545552 - 28545778
Alignment:
Q  256 ctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactgagaacc 355  Q
    |||||||||||||  ||| |||||||||||||||| | ||||||||||| || || |   ||||||| |||||| ||||||||||||||| || | ||||    
T  28545552 ctaataatggtaaatattagcatcttttggcttacgtttctgccttttttttattgt---attattatattttgtagttttctaattctatctta-aacc 28545647  T
Q  356 aacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtgccac 455  Q
    || |||  | | |   ||||||||||   ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||     
T  28545648 aagtttgttccctcccaggatcatcactctttggtcaggagcctgcttttgtaggttttggctctactcctactcaaacaagtccatgtagaagtgccat 28545747  T
Q  456 ccaaccatcacaaccagcatttggaagtaac 486  Q
    ||||||||||| |||||||||||||||||||    
T  28545748 ccaaccatcacgaccagcatttggaagtaac 28545778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 34896617 - 34896486
Alignment:
Q  126 tgtgaaacacttaagaacgaga---gtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacc 222  Q
    |||||||||||||||||| |||   ||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  34896617 tgtgaaacacttaagaacaagaacagtacgaaagaatgtgatttctttcagctatatgcattctctattcaattttagtttacatttctttttgaagacc 34896518  T
Q  223 taaagattacatgacaactgagatttgtatta 254  Q
    |||||||||| | |||||||||||||||||||    
T  34896517 taaagattacgtaacaactgagatttgtatta 34896486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 34896868 - 34896755
Alignment:
Q  18 agtgcttagccaattcttttatgaatgatatgcaaaaataactgtcaagctttgctaaatctgaatttattattattgtattttctttcttctctaatga 117  Q
    |||||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  34896868 agtgcttagccaatgcttttatggttgatttgcgaaaataactgtcaagctttgctaaatctgaatttattattatcatattttctttcttttctaatga 34896769  T
Q  118 agatttcatgtgaa 131  Q
    ||||||||||||||    
T  34896768 agatttcatgtgaa 34896755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 253 - 447
Target Start/End: Complemental strand, 34910251 - 34910064
Alignment:
Q  253 tatctaataatggtaatcattggcatcttttggcttacttatctgcct-ttttattgtttttatattattagattttgcagttttctaattctaactgag 351  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||        |||||| |||||||||||||||||||||| |||||    
T  34910251 tatctaataatggtattcattagcatcttttggcttacttttctgccttttttattg--------ttattatattttgcagttttctaattctatctgag 34910160  T
Q  352 aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttgga 447  Q
    |||||||| |  | |||   |||||| |||   |||||||||  ||||||||||||||||||||||| ||| |||||||||| |||||| ||||||    
T  34910159 aaccaactctcttccttcccaggatcgtcattctttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttgga 34910064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 253 - 487
Target Start/End: Original strand, 28543315 - 28543544
Alignment:
Q  253 tatctaataatggtaatcattggcatcttttggcttacttatctgccttttt-attgtttttatattattagattttgcagttttctaattctaactgag 351  Q
    ||||||||||||||||||||| ||||||||||||||| || ||| ||||||| ||||||     ||||||| ||||||| ||||||||||||||  |||     
T  28543315 tatctaataatggtaatcattagcatcttttggcttagttttctcccttttttattgtt-----attattatattttgc-gttttctaattctatttgaa 28543408  T
Q  352 aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtg 451  Q
    |||| ||| |  | |||   |||||||||| | ||| | ||| ||||| ||||||||||||||||||| |  |||||||| | |||||| |||||| |||    
T  28543409 aaccgactctcttccttcccaggatcatcatccttttgccaggagccttcttttggaggttttggctcgatgcctactcagataagtccttttggatgtg 28543508  T
Q  452 ccacccaaccatcacaaccagcatttggaagtaaca 487  Q
    |||  |||||||||||||||| ||||||||| ||||    
T  28543509 ccatacaaccatcacaaccagtatttggaagcaaca 28543544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 34910386 - 34910281
Alignment:
Q  149 tatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagattt 248  Q
    ||||||||||||||||||||||||| ||||||| ||||||| || ||  ||||||||  |||||| | |||||||||||||||||| || ||| ||||||    
T  34910386 tatgaaggaatgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttgtaaagacctaaagattacataacgactaagattt 34910287  T
Q  249 gtatta 254  Q
    ||||||    
T  34910286 gtatta 34910281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 34910565 - 34910499
Alignment:
Q  65 agctttgctaaatctgaatttattattattgtattttctttcttctctaatgaagatttcatgtgaa 131  Q
    ||||||||| | ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  34910565 agctttgcttactctgaatgtactattattgtattttctttcttctttaatgaagatttcatgtgaa 34910499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 550 - 602
Target Start/End: Complemental strand, 34896174 - 34896122
Alignment:
Q  550 ccagcatttggttcgacatgcactcctgcatttggtgctactagcacccctgc 602  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  34896174 ccagcatttggttcgacaggaactcctgcatttggtgctacgagcacccctgc 34896122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 28542970 - 28543066
Alignment:
Q  34 ttttatgaatgatatgcaaaaataactgtcaagctttgctaaatctgaatttattattattgtattttctttcttctctaatgaagatttcatgtgaa 131  Q
    ||||||||| ||| |||||| | || |||| ||||||| | | | |||||||| |||||||||||||| |||||||| |||||||| |||||||||||    
T  28542970 ttttatgaaggatttgcaaaca-aattgtctagctttggttactttgaatttactattattgtattttatttcttctttaatgaagttttcatgtgaa 28543066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 590
Target Start/End: Complemental strand, 34916019 - 34915983
Alignment:
Q  554 catttggttcgacatgcactcctgcatttggtgctac 590  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34916019 catttggttcgacaggcactcctgcatttggtgctac 34915983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 28543202 - 28543232
Alignment:
Q  149 tatgaaggaatgtgatttctttcagctatat 179  Q
    |||||||||||||||||||||||||||||||    
T  28543202 tatgaaggaatgtgatttctttcagctatat 28543232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University