View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6165_low_2 (Length: 376)
Name: NF6165_low_2
Description: NF6165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6165_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 7888100 - 7887750
Alignment:
| Q |
8 |
ccaataaaatcaatcaattttcaattataaaatagataccaatgaaagtcctaatcaacgtgcgaactctcacctattccaactttaaattgattgaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7888100 |
ccaataaaatcaatcaattttcaattataaaatagataccaatgaaagtcctaatcaacgtgcgaactctcacctattccaactttaaattgattgaaaa |
7888001 |
T |
|
| Q |
108 |
ctttaaatttaaattaaagattgatttatcgttccataaaattaaaagatcgaattattcaaactctacaattttgagtatcaatattcactcgataaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7888000 |
ctttaaatttaaattaaagattgatttatcgttccataaaattaaaagatcgaattattcaaactctacaattttgagtatcaatattcactcgataaga |
7887901 |
T |
|
| Q |
208 |
taagtttgctagctaaaataacctgataggaagaagatgcagttccaaagaggaagttacgtggaaatggggatgaacttaaattattttctaaggacac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7887900 |
taagtttgctagctaaaataacctgataggaagaagatgcagttccaaagaggaagttacgtggaaatagggatgaacttaaattattttctaaggacac |
7887801 |
T |
|
| Q |
308 |
aaaaccacatgatcccatgaaaatggagaagataaagcttagtacaaagag |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7887800 |
aaaaccacatgatcccatgaaaatggagaagataaagcttagtacaaagag |
7887750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University