View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6165_low_4 (Length: 338)

Name: NF6165_low_4
Description: NF6165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6165_low_4
NF6165_low_4
[»] chr4 (23 HSPs)
chr4 (14-322)||(6614288-6614596)
chr4 (26-322)||(23158404-23158700)
chr4 (21-319)||(15649324-15649622)
chr4 (50-318)||(36279461-36279729)
chr4 (26-324)||(51872357-51872655)
chr4 (102-316)||(18116642-18116857)
chr4 (24-315)||(17838795-17839086)
chr4 (24-162)||(4723310-4723448)
chr4 (25-315)||(8110589-8110879)
chr4 (106-315)||(22340331-22340540)
chr4 (106-313)||(29123702-29123908)
chr4 (66-315)||(4303463-4303712)
chr4 (66-315)||(15705821-15706070)
chr4 (50-316)||(29192575-29192841)
chr4 (60-315)||(12915497-12915752)
chr4 (58-249)||(12290496-12290687)
chr4 (89-316)||(34994461-34994688)
chr4 (89-316)||(50694014-50694241)
chr4 (23-208)||(3621238-3621423)
chr4 (89-316)||(36950936-36951163)
chr4 (101-324)||(24059390-24059613)
chr4 (89-316)||(17469384-17469611)
chr4 (59-240)||(25134983-25135164)
[»] chr2 (11 HSPs)
chr2 (21-322)||(27914855-27915156)
chr2 (14-322)||(23384516-23384811)
chr2 (20-322)||(21963074-21963376)
chr2 (30-322)||(32349550-32349842)
chr2 (106-316)||(38938224-38938434)
chr2 (167-322)||(30275703-30275857)
chr2 (26-157)||(30274400-30274532)
chr2 (29-315)||(33937038-33937322)
chr2 (29-315)||(22298587-22298873)
chr2 (29-315)||(1258135-1258422)
chr2 (201-307)||(20007345-20007451)
[»] chr7 (22 HSPs)
chr7 (20-322)||(9403379-9403681)
chr7 (21-322)||(37075844-37076145)
chr7 (21-319)||(34981514-34981812)
chr7 (26-322)||(12121258-12121554)
chr7 (28-322)||(24819371-24819665)
chr7 (14-204)||(3483065-3483256)
chr7 (25-315)||(40892025-40892315)
chr7 (29-322)||(36575636-36575929)
chr7 (108-311)||(586538-586741)
chr7 (25-252)||(21607909-21608136)
chr7 (28-249)||(31252892-31253113)
chr7 (65-315)||(27278313-27278563)
chr7 (26-315)||(20705753-20706042)
chr7 (26-315)||(20873797-20874086)
chr7 (101-315)||(18815654-18815868)
chr7 (215-315)||(27990212-27990312)
chr7 (84-316)||(45649421-45649653)
chr7 (29-315)||(27868585-27868861)
chr7 (89-316)||(47553024-47553251)
chr7 (201-293)||(8457467-8457559)
chr7 (96-160)||(22866164-22866228)
chr7 (101-240)||(5196380-5196519)
[»] chr5 (11 HSPs)
chr5 (21-322)||(10462391-10462692)
chr5 (20-322)||(5825223-5825525)
chr5 (21-322)||(6678830-6679131)
chr5 (106-315)||(27891450-27891659)
chr5 (111-300)||(11265782-11265971)
chr5 (84-286)||(38931499-38931701)
chr5 (35-315)||(31962933-31963213)
chr5 (24-100)||(3998524-3998600)
chr5 (106-311)||(29150057-29150262)
chr5 (96-286)||(8895126-8895316)
chr5 (89-160)||(29322528-29322599)
[»] chr3 (21 HSPs)
chr3 (24-322)||(17154061-17154360)
chr3 (21-322)||(53152339-53152640)
chr3 (25-316)||(23571881-23572172)
chr3 (20-249)||(32945557-32945786)
chr3 (54-322)||(3514384-3514652)
chr3 (29-322)||(9818733-9819028)
chr3 (25-313)||(48547225-48547513)
chr3 (24-315)||(42462390-42462681)
chr3 (24-149)||(44879665-44879790)
chr3 (28-226)||(9246703-9246901)
chr3 (113-315)||(30737247-30737449)
chr3 (102-230)||(8542253-8542381)
chr3 (27-315)||(23602936-23603224)
chr3 (72-316)||(10753781-10754025)
chr3 (60-315)||(42459553-42459807)
chr3 (60-311)||(8594963-8595214)
chr3 (29-316)||(39633092-39633379)
chr3 (89-316)||(16663711-16663938)
chr3 (89-316)||(52196022-52196249)
chr3 (71-148)||(52962633-52962710)
chr3 (201-241)||(28393365-28393405)
[»] chr8 (6 HSPs)
chr8 (21-319)||(2959847-2960145)
chr8 (24-322)||(26077980-26078278)
chr8 (25-311)||(31423480-31423766)
chr8 (66-299)||(26390518-26390751)
chr8 (50-299)||(29529870-29530118)
chr8 (89-316)||(10801940-10802168)
[»] chr6 (9 HSPs)
chr6 (26-322)||(18295650-18295946)
chr6 (24-322)||(2893907-2894205)
chr6 (106-313)||(667016-667222)
chr6 (23-315)||(28605148-28605440)
chr6 (89-316)||(5391777-5392004)
chr6 (101-240)||(17227675-17227814)
chr6 (106-240)||(7218686-7218820)
chr6 (102-300)||(9759779-9759977)
chr6 (89-240)||(14223505-14223656)
[»] chr1 (13 HSPs)
chr1 (102-316)||(41343068-41343282)
chr1 (26-322)||(10003603-10003899)
chr1 (50-322)||(27029648-27029920)
chr1 (24-249)||(44753748-44753973)
chr1 (26-217)||(48759777-48759968)
chr1 (25-302)||(5556938-5557215)
chr1 (66-311)||(49369479-49369724)
chr1 (29-240)||(37666028-37666239)
chr1 (106-315)||(45757435-45757644)
chr1 (102-307)||(40392461-40392658)
chr1 (26-139)||(32152387-32152500)
chr1 (216-324)||(26995826-26995934)
chr1 (101-154)||(26995712-26995765)
[»] scaffold0041 (1 HSPs)
scaffold0041 (25-315)||(73969-74259)
[»] scaffold0032 (1 HSPs)
scaffold0032 (24-311)||(58661-58948)
[»] scaffold0003 (1 HSPs)
scaffold0003 (106-240)||(225060-225194)
[»] scaffold0289 (1 HSPs)
scaffold0289 (217-324)||(10928-11035)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 6614596 - 6614288
Alignment:
Q  14 caaaggcccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagct 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6614596 caaaggcccaaaaaaaagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacaaacaaaatgtagttagct 6614497  T
Q  114 ttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6614496 ttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcatgttgcgatctttccatatag 6614397  T
Q  214 taaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgcc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614396 taaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgcc 6614297  T
Q  314 attgagaac 322  Q
    |||||||||    
T  6614296 attgagaac 6614288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 23158700 - 23158404
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    ||||||||||||||||| ||| | ||||||||||||| | |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  23158700 aaacagactttacaaaacagtctgtaaacaaggtaaatgattttttctccaataagaataataaaaaacgaacaagatgcagttagctttcaaccaccaa 23158601  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
    |||||||| | |||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||    
T  23158600 aacgtttgaaatttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctgttgcgatcttttcatatagtatataagaccg 23158501  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||    
T  23158500 aaatccaaataatagtaaaagctttcatagaattctttgagaaacctccaagagcgcaaaactgattagcatgagtatataaattgccattgagaac 23158404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 15649622 - 15649324
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    ||||||||||||||||||| |||||| | |||||||| ||| |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  15649622 ccaaaaaacagactttacacaatagtctgtaaacaagataatgggttttgcctccaataagaataatcaaaaacgaacaatatgtagttagctttcaacc 15649523  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  15649522 accaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctgttacgatctttccaaatagaaaataa 15649423  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgag 319  Q
    |||||||||||||||||||||||| | || || ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  15649422 gaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataagtttccattgag 15649324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 50 - 318
Target Start/End: Complemental strand, 36279729 - 36279461
Alignment:
Q  50 taaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttca 149  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  36279729 taaacaaggtaaaagattttttctccaataagaataataaaaaacgaacaagatgtagttagctttcaaccaccaaaacgtttgaagtttgactctttca 36279630  T
Q  150 agaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctt 249  Q
    || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  36279629 agtagaacttccaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccatatagtatataagaccgaaatccaaataatagtaaaagctt 36279530  T
Q  250 tcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattga 318  Q
    ||| | ||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||    
T  36279529 tcatataattctttgagaaacctccaagagcgcaaaactgattagcatgagtatataaattgccattga 36279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 51872357 - 51872655
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    ||||||||||||||| | | | | |||| |||||||||| || | | |||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  51872357 aaacagactttacaacacaatctgtaaataaggtaaaggattatttttccaataagagtaatcaaaaacgaacaagatgtagttagctttcaaccaccaa 51872456  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
    |||||||| |||||||| |||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||| |||    
T  51872457 aacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaatcctcctgttgcgatttttccaaatagtatataaggccg 51872556  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaactg 324  Q
    | ||||||||||||| ||| ||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||| | |||| |||||||||| |||||||    
T  51872557 atatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagaccacaaaactgattagcatgagtatatgaattgccattaagaactg 51872655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 102 - 316
Target Start/End: Complemental strand, 18116857 - 18116642
Alignment:
Q  102 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggtttt-gaaaaatcctcctgttgcga 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| | ||||||||||| ||||||    
T  18116857 atgtagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggtttttggaaaatcctcctattgcga 18116758  T
Q  201 tctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtg 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||| ||    
T  18116757 tctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaactgattagcatttg 18116658  T
Q  301 aatataaattgccatt 316  Q
     |||||||||||||||    
T  18116657 tatataaattgccatt 18116642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 24 - 315
Target Start/End: Complemental strand, 17839086 - 17838795
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    |||||||||| ||||||   ||| | |||||||  ||| || |||||||||||| | | ||||| ||||  |||||  ||| |||| ||||||| |||||    
T  17839086 aaaaacagacattacaaggcagtctgtaaacaacataagggattttgtctccaaaagggataatcaaaagtgaacatgatgaagtttgctttcatccacc 17838987  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagac 223  Q
    |||| ||||| ||||| ||||||||||||||| |||| | |||| | || |||||||| |||||| || |||||||||||||||| |||  |||||| ||    
T  17838986 aaaaagtttgaagtttaaccctttcaagaagagcttcaagatgatccatatggttttggaaaatcttcatgttgcgatctttccaaataacaaataaaac 17838887  T
Q  224 cgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    | |||||||||||||||| || |||||||  ||||||||||| || || |||||||||||||||||||| ||||||| ||||||||||||||    
T  17838886 caaaatccaaataatagacaaagctttcatggaattctttgaaaagcccccaagagcacaaaactgattagcatgtgtatataaattgccat 17838795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 4723448 - 4723310
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    ||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  4723448 aaaaacagactttacaaaacagtctgtaaacaaggtaaaggattttgtctccaataagaataatcaaaaacgaacaagatgtagttagccttcaaccacc 4723349  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttcca 162  Q
    |||||||||| ||||||||||||| || |||||||||||    
T  4723348 aaaacgtttgaagtttgacccttttaataagaacttcca 4723310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 8110589 - 8110879
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    ||||||||| ||||| || ||| | ||||||| ||||||| |||||||||||| | | ||||| |||| ||||    ||| |||  ||||||| ||||||    
T  8110589 aaaacagacattacacaacagtctgtaaacaatgtaaaggattttgtctccaaaagggataatcaaaagcgaaagtgatgaagtctgctttcagccacca 8110688  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    | | || || ||||| |||||||||| |||| |||| | |||  ||| |||||| |||||||||||||||||||| || ||||| |||  ||||||||||    
T  8110689 ataagtctgaagtttaaccctttcaaaaagagcttcgagatgttcaacttggttctgaaaaatcctcctgttgcggtccttccaaataacaaataagacc 8110788  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||| ||||||| ||| ||| ||  ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  8110789 gaaatccatataatagtaaaagctgtcctagaattctttgagaaccctccaagagcacaaaactgattagcatgtgaaaatatattgccat 8110879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 106 - 315
Target Start/End: Original strand, 22340331 - 22340540
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| | |||| | || | |||||| |||||| ||   |||||||||||    
T  22340331 agtttgctttcatccaccaaaaagtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatcttcaaattgcgatcttt 22340430  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    |||||||  |||||| ||| |||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| | ||||    
T  22340431 ccatataacaaataaaaccaaaatccaaataatagacaaagctttcatagaattctttgaaaaacctccaagagcacaaaactgattagcatgaggatat 22340530  T
Q  306 aaattgccat 315  Q
    ||||||||||    
T  22340531 aaattgccat 22340540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 106 - 313
Target Start/End: Complemental strand, 29123908 - 29123702
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| | |||| | || | |||||| |||||||||   |||||||||||    
T  29123908 agtttgctttcatccaccaaaaagtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatcctcaaattgcgatcttt 29123809  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    ||| |||  |||||| |||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| | ||||    
T  29123808 ccaaataacaaataaaaccgaaatccaaataatagacaaagctttcatagaattctttga-aaacctccaagagcacaaaactgattagcatgaggatat 29123710  T
Q  306 aaattgcc 313  Q
    ||||||||    
T  29123709 aaattgcc 29123702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 315
Target Start/End: Complemental strand, 4303712 - 4303463
Alignment:
Q  66 ttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaat 165  Q
    |||||||||||| | | ||||| ||||  ||||  |||| |||  ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| | ||    
T  4303712 ttttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagat 4303613  T
Q  166 gaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttga 265  Q
    || | || |||||||| |||||| || | |||||||||||||| |||  |||||| | ||||||||||| |||||| || ||||||  |||| |||||||    
T  4303612 gacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaatcgaaatccaaacaatagacaaagctttcgtagaactctttga 4303513  T
Q  266 gaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
     ||||||||||| |||||||| ||||| ||||| | ||||||||||||||    
T  4303512 aaaacctccaagggcacaaaattgattagcatgggtatataaattgccat 4303463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 315
Target Start/End: Complemental strand, 15706070 - 15705821
Alignment:
Q  66 ttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaat 165  Q
    |||||||||||| | | ||||| ||||  ||||  |||| |||  ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| | ||    
T  15706070 ttttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagat 15705971  T
Q  166 gaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttga 265  Q
    || | || |||||||| |||||| || | |||||||||||||| ||| ||||||| ||||||||||||| |||||| || ||||||  |||| |||||||    
T  15705970 gacccatatggttttggaaaatcttcatattgcgatctttccaaataataaataaaaccgaaatccaaacaatagataaagctttcgtagaactctttga 15705871  T
Q  266 gaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
     ||| ||||||| |||||||| || || ||||| | ||||||||||||||    
T  15705870 aaaatctccaagggcacaaaattggttagcatgggtatataaattgccat 15705821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 316
Target Start/End: Complemental strand, 29192841 - 29192575
Alignment:
Q  50 taaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttca 149  Q
    ||||||| ||||||| ||||  |||||||| | ||| | |||| ||||||  ||||| || ||||||||||||||||||||||||||||| |||||||||    
T  29192841 taaacaaagtaaaggatttttcctccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaaaacgtttggagtttaaccctttca 29192742  T
Q  150 agaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctt 249  Q
    || ||| |||| | || | |||  || |  |||||||| |||||||| | ||||||| | ||    ||||| ||||||||||||||||||| |||  ||     
T  29192741 agtagagcttcaagataatcaaaatgatgctgaaaaattctcctgtttctatctttctaaatgacgaataaaaccgaaatccaaataatagtaaaacctg 29192642  T
Q  250 tcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccatt 316  Q
    ||| ||| || ||||| ||||| |||||||||||||| |||   |||||||||| |||||| |||||    
T  29192641 tcatagagttttttgaaaaacccccaagagcacaaaattgagaagcatgtgaatgtaaattaccatt 29192575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 315
Target Start/End: Original strand, 12915497 - 12915752
Alignment:
Q  60 aaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaactt 159  Q
    ||||| |||||||||||| |   ||| | |||||||||   |||| |||| ||||||||||||||| ||||||| ||||| |||||||| | |||| |||    
T  12915497 aaaggattttgtctccaaaagtgatagtcaaaaacgaatgtaatgaagtttgctttcaaccaccaatacgtttgaagtttaaccctttccataagagctt 12915596  T
Q  160 ccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatt 259  Q
    | | |||| |||  || ||||| ||||| ||||||||||||||||||||||||  | |||||||||||||| ||||||||| ||| |||  |  |||  |    
T  12915597 ctagatgatcaaagtgattttggaaaattctcctgttgcgatctttccatataacatataagaccgaaatctaaataatagtaaacgctaacgtagacct 12915696  T
Q  260 ctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    | ||||||| || || ||||||||||| ||||| ||||| | || |||||| ||||    
T  12915697 ccttgagaagccaccgagagcacaaaaatgattagcatgagtatgtaaattaccat 12915752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 12290496 - 12290687
Alignment:
Q  58 gtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaac 157  Q
    |||||||||||||||||||| | ||||| | ||||  |||||  ||| |||| ||||||||||||||| | || || ||||| ||||||||   |||| |    
T  12290496 gtaaagggttttgtctccaaaaggaatagtcaaaagtgaacatgatgaagtttgctttcaaccaccaataagtctgaagtttaaccctttccgaaagagc 12290595  T
Q  158 ttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctt 249  Q
    ||| | |||  || ||||||| ||||||||||| || || ||||||||||| |||  |||||||||||||||||||||||||| ||| ||||    
T  12290596 ttcgagatgttcactttggttctgaaaaatccttctatttcgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctt 12290687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 34994461 - 34994688
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| ||||||||||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| | |||| ||   || || ||||||||     
T  34994461 aaaatcgaacaaaatgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcagagtgattctgaaaaatt 34994560  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    |||||||| | ||||||||| ||    ||||| || |||||||| ||||  | |||| || ||  ||| || |||||||||||||||||||||||||| |    
T  34994561 ctcctgtttctatctttccaaatgacgaataaaacagaaatccatataactgtaaatcctgtcctagacttttttgagaaacctccaagagcacaaaatt 34994660  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  34994661 gagtagcatgagagtataaattaccatt 34994688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 50694241 - 50694014
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| |||||| |||| | || ||||||| ||||||||||||||| ||||| |||||||||||||||||||| | |||| |||  || || ||||||||     
T  50694241 aaaatcgaacataatgcaattcgctttcagccaccaaaacgtttgaagtttaaccctttcaagaagaacttcaagatgatcaaagtgattctgaaaaatt 50694142  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    |||||||| | ||||||||| ||    ||||| ||||||||||||||||  | |||   | ||  | | || |||||||||||||||||||||||||| |    
T  50694141 ctcctgtttctatctttccaaatgacgaataaaaccgaaatccaaataactgtaaaacatgtcctacacttttttgagaaacctccaagagcacaaaatt 50694042  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  50694041 gagtagcatgagagtataaattaccatt 50694014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 3621238 - 3621423
Alignment:
Q  23 aaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccac 122  Q
    ||||||||||| |||||  | ||| | ||||||| ||||| |||||||||||||| ||||||| | |||| ||||||  |   |||| ||||||||||||    
T  3621238 aaaaaacagacattacatgacagtctgtaaacaatgtaaatggttttgtctccaaaaagaatagtcaaaagcgaacatgacaaagtttgctttcaaccac 3621337  T
Q  123 caaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttcca 208  Q
    ||| | || || ||||| |||||||||| |||| |||| | |||  || ||||||| ||||||||||||||||| |||||||||||    
T  3621338 caataagtctgaagtttaaccctttcaaaaagagcttcaagatgttcattttggttctgaaaaatcctcctgttacgatctttcca 3621423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 36950936 - 36951163
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| |||||| || ||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| | |||| |||  || || ||||||||     
T  36950936 aaaatcgaacataacgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaagtgattctgaaaaatt 36951035  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    || ||||| ||||||||||| ||    ||||| || || ||||| ||||  | |||| || ||  ||| || |||||||||||||||||||||||||| |    
T  36951036 cttctgtttcgatctttccaaatgacgaataaaacagacatccagataactgtaaatcctgtcctagatttttttgagaaacctccaagagcacaaaatt 36951135  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  36951136 gagtagcatgagagtataaattaccatt 36951163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 324
Target Start/End: Original strand, 24059390 - 24059613
Alignment:
Q  101 aatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcga 200  Q
    ||||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||  ||   |  ||| |||  || || | |||||| ||  |||| ||     
T  24059390 aatgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaagaagtcctgtaagctgatcaaaatgattataaaaaattctattgttacgg 24059489  T
Q  201 tctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtg 300  Q
    ||||| || |||  ||||||||||||||||||||||||||| |||| | ||   |||||||||||||| |||| ||||||  |||||||||||| ||| |    
T  24059490 tcttttcagataacaaataagaccgaaatccaaataatagagaatgatgtccttgaattctttgagaaccctctaagagcttaaaactgatttgaatgag 24059589  T
Q  301 aatataaattgccattgagaactg 324  Q
     |||||| | |||||  |||||||    
T  24059590 catataagtcgccatgaagaactg 24059613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 17469611 - 17469384
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| |||||| |||||| || ||||||| ||||||||| ||||| ||||| | ||||||||||||| |||| | |||| |||  || || ||||||||     
T  17469611 aaaatcgaacataatgtaattcgctttcagccaccaaaatgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaagtgattctgaaaaatt 17469512  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataa-tagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaac 287  Q
    |||||||| | ||||||||| ||    |||||  | ||||| ||||||| || ||||  || ||  ||| || ||||||||||||||||||||||||||     
T  17469511 ctcctgtttctatctttccaaatgacgaataaagctgaaattcaaataactataaaa-cctgtcctagacttttttgagaaacctccaagagcacaaaat 17469413  T
Q  288 tgatttgcatgtgaatataaattgccatt 316  Q
    ||| | ||||| || |||||||| |||||    
T  17469412 tgagtagcatgagagtataaattaccatt 17469384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 25134983 - 25135164
Alignment:
Q  59 taaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaact 158  Q
    |||||| ||||| |||||| ||||||| |  ||  |||||| ||||||||| ||||||||||||||| | |||||| |||| ||| |||| |||||  ||    
T  25134983 taaaggattttgcctccaaaaagaatactcgaagtcgaacataatgtagttcgctttcaaccaccaataagtttggtgtttaaccttttcgagaagccct 25135082  T
Q  159 tccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatag 240  Q
     | |  ||| | |  |  || |||||||  || ||||| ||||||||||| |||  ||||||||| ||||||||||||||||    
T  25135083 gcaagctgatccaagtcattatgaaaaactctactgttacgatctttccaaataacaaataagactgaaatccaaataatag 25135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 27915156 - 27914855
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27915156 ccaaaaaacagactttacaaaatattctgtaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaatatgtagttagctttcaacc 27915057  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27915056 accaaaacgtttggagtttgaccctttcaagaagaactttcaaatgaacaatttggttttggaaaatcctcctgttgcgatctttccatatagtaaataa 27914957  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgaga 320  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27914956 gaccgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactggtttgcatgtgaatataaattgccattgaga 27914857  T
Q  321 ac 322  Q
    ||    
T  27914856 ac 27914855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 23384516 - 23384811
Alignment:
Q  14 caaaggcccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagct 113  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||             |||||||||| ||||||||||||    
T  23384516 caaaggcccaaaaaacagactttacaaaatagtctgtaaacaaggtaaagggttttgtctccaa-------------aaacgaacaatatgtagttagct 23384602  T
Q  114 ttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatag 213  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23384603 ttcaaccaccaaaacatttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgtgatctttccatatag 23384702  T
Q  214 taaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgcc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23384703 taaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagtacaaaactgatttgcatgtgaatataaattgcc 23384802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 21963074 - 21963376
Alignment:
Q  20 cccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaac 119  Q
    |||||||||||||||||||| |||||| | ||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  21963074 cccaaaaaacagactttacacaatagtctgtaaacaatgtaaagggttttgcctccaataagaataatcaaaaacgaacaatatgtagttagctttcaac 21963173  T
Q  120 caccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaata 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21963174 caccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttgaaaaatcctcctgttgcgatctttccaaatagtaaata 21963273  T
Q  220 agaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgag 319  Q
    ||||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  21963274 agaccgaaatccaaataatagaaaaagcttgcacaaaatgctttgagaaaccgccaagtgcacaaaactgattagcatgtgaatataaattgccattaag 21963373  T
Q  320 aac 322  Q
    |||    
T  21963374 aac 21963376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 32349550 - 32349842
Alignment:
Q  30 agactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacg 129  Q
    ||||||||||||| ||| | ||||||||||||||| |||  |||||||||||| |||| |||||||||||| ||||||||| |||||||| |||||||||    
T  32349550 agactttacaaaacagtctgtaaacaaggtaaaggatttattctccaataagagtaatcaaaaacgaacaagatgtagttaactttcaactaccaaaacg 32349649  T
Q  130 tttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaat 229  Q
    |||| |||||||| |||||||| || || | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  32349650 tttgaagtttgactctttcaagtagcaccttcaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccatatagtgtataagaccgaaat 32349749  T
Q  230 ccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| | |||||||||||||||||||||    
T  32349750 ccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaactgattagcatgagtatataaattgccattgagaac 32349842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 316
Target Start/End: Original strand, 38938224 - 38938434
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| |||||||||| |||||| ||||| ||||| ||||||||||||||| |||| | |||  | || |||||||| |||||| || |||||||||||||    
T  38938224 agtttgctttcaaccgccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatggtccatatggttttggaaaatcatcatgttgcgatcttt 38938323  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    ||| |||  ||||||||| |||||||||||||||| ||| ||||||| |||||||||||| || |||| |||||||||||| ||||| ||||||| ||||    
T  38938324 ccaaataacaaataagacagaaatccaaataatagtaaaagctttcatagaattctttgaaaagcctctaagagcacaaaaatgattagcatgtgtatat 38938423  T
Q  306 aaattgccatt 316  Q
    |||||||||||    
T  38938424 aaattgccatt 38938434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 167 - 322
Target Start/End: Original strand, 30275703 - 30275857
Alignment:
Q  167 aacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgag 266  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  30275703 aacaatttggttttggaaaattctcctgttgcgatcttttcatatagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgag 30275802  T
Q  267 aaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    |||||| | ||||| ||||||||||| ||||| | |||||||||||| ||||||||    
T  30275803 aaacct-ctagagcgcaaaactgattagcatgagtatataaattgccgttgagaac 30275857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 30274400 - 30274532
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgt-ctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    ||||||||||||||||| ||| | ||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30274400 aaacagactttacaaaacagtctgtaaacaaggtaaaggatttttttctccaataagaataataaaaaacgaacaagatgtagttagctttcaaccacca 30274499  T
Q  125 aaacgtttggagtttgaccctttcaagaagaac 157  Q
    ||| ||||| |||||||| |||||||| |||||    
T  30274500 aaatgtttgaagtttgactctttcaagtagaac 30274532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 33937322 - 33937038
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    ||||| |||||||  ||| | |||||||| |||||| |||| ||||||||| | ||| | |||| ||||||  ||||| || ||||||||||||||| ||    
T  33937322 cagacattacaaagcagtctgtaaacaagctaaaggattttttctccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaatac 33937223  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaa 228  Q
    ||||||||||| ||||||||||| ||| |||| | |||| |||  || || |||||||| |||||||| | ||||||||| ||    ||||| |||||||    
T  33937222 gtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattctgaaaaattctcctgtttctatctttccaaatgacgaataaaaccgaaa 33937123  T
Q  229 tccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    ||||||||| || |||| || ||  ||  || ||||| |||||||||||||||||||| ||  | |||||||| | |||||| ||||    
T  33937122 tccaaataacagtaaatcctgtcgtag--ttttttgaaaaacctccaagagcacaaaattgggtagcatgtgagtgtaaattaccat 33937038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 22298587 - 22298873
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    ||||| |||||||| ||| | |||||||  |||||| ||||  |||||||| | ||| | |||| | ||||  ||||| || ||||||||||||||| ||    
T  22298587 cagacattacaaaacagtctgtaaacaaactaaaggatttttcctccaatagggatagtcaaaatcaaacatgatgtaattcgctttcaaccaccaatac 22298686  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaa 228  Q
    ||||||||||| ||||||||||| ||| |||| | |||| |||  || ||||||||||| |||||||| | |||||| |||||    ||||  |||||||    
T  22298687 gtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattttgaaaaattctcctgtttcaatcttttcatatgacgaatataaccgaaa 22298786  T
Q  229 tccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    ||||||| | || |||  || ||  ||| || |||||||||||||||||||||||||| ||  | |||||||| | |||||| ||||    
T  22298787 tccaaatgacagtaaagcctgtcctagagttttttgagaaacctccaagagcacaaaattgggtagcatgtgagtgtaaattaccat 22298873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 1258135 - 1258422
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    ||||| |||||||  ||| | |||||||  |||||| ||||  |||||||| | ||| | |||| ||| ||  ||||| || ||||||||||||||| ||    
T  1258135 cagacattacaaagcagtctgtaaacaaactaaaggatttttcctccaatagggatagtcaaaatcgagcatgatgtaattcgctttcaaccaccaatac 1258234  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttg-aaaaatcctcctgttgcgatctttccatatagtaaataagaccgaa 227  Q
     |||||||||| ||||||||||  ||| |||| | |||| |||  || || || |||||| |||||||| | ||||||||| ||    ||||| ||||||    
T  1258235 atttggagtttaaccctttcaaagagagcttcaagatgatcaaagtgattatgaaaaaattctcctgtttctatctttccaaatgaagaataaaaccgaa 1258334  T
Q  228 atccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||||| || ||||  | ||  ||| || ||||| |||||||||||||||||||| ||  | |||||||| | |||||| ||||    
T  1258335 atccaaataacagtaaatcttgtcctagagttttttgaaaaacctccaagagcacaaaattgggtagcatgtgagtgtaaattaccat 1258422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 20007345 - 20007451
Alignment:
Q  201 tctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtg 300  Q
    |||||||| |||  ||||||||||||||||||||||||||| |||| | ||   ||||| |||||||| ||||||||| ||||||| ||||||| ||| |    
T  20007345 tctttccagataacaaataagaccgaaatccaaataatagagaatgttatccttgaattttttgagaaccctccaagaacacaaaattgatttgaatgag 20007444  T
Q  301 aatataa 307  Q
     ||||||    
T  20007445 catataa 20007451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 9403681 - 9403379
Alignment:
Q  20 cccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaac 119  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  9403681 cccaaaaaacagactttacacaatagtctgtaaacaaggtaaagggttttgcctccaataagaataatcaaaaacgaacaatatgtagttagctttcaac 9403582  T
Q  120 caccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9403581 caccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaatagtaaata 9403482  T
Q  220 agaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgag 319  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9403481 agaccgaaatccaaataatagaaaatgctttcaaagaatgctttgagaaacctccaagtgcacaaaactgatttgcatgtgaatataaattgccattgag 9403382  T
Q  320 aac 322  Q
    |||    
T  9403381 aac 9403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 37076145 - 37075844
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  37076145 ccaaaaaacagactttacacaatagtctgtaaacaaggtaaagggttttgcctccaataagaataatcaaaaacgaacaatatgtagttagctttcaacc 37076046  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  37076045 accaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaatagtaaataa 37075946  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgaga 320  Q
    |||||||||||||||||||||||| | || || ||||| ||||||||| ||| |||| |||||||||||||| |||||||||||||||||| ||||||||    
T  37075945 gaccgaaatccaaataatagaaaaagtttgcacagaatgctttgagaatccttcaagtgcacaaaactgattagcatgtgaatataaattgtcattgaga 37075846  T
Q  321 ac 322  Q
    ||    
T  37075845 ac 37075844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 34981514 - 34981812
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    ||||||||||||||||||| |||||| | |||||||| ||| |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  34981514 ccaaaaaacagactttacacaatagtctgtaaacaagataatgggttttgcctccaataagaataatcaaaaacgaacaatatgtagttagctttcaacc 34981613  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  34981614 accaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctgttacgatctttccaaatagaaaataa 34981713  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgag 319  Q
    |||||||||||||||||||||||| | || || ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  34981714 gaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataagtttccattgag 34981812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 12121258 - 12121554
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    ||||||||||||||| | ||| | ||||||||||||||| || | |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  12121258 aaacagactttacaacacagtctgtaaacaaggtaaaggattatttctccaataagagtaatcaaaaacgaacaagatgtagttagctttcaaccaccaa 12121357  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
    |||||||| |||||||| |||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |    
T  12121358 aacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccatatagtatataaggctg 12121457  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    | ||||||||||||| ||| ||||||| |||||||||||||||||| || ||||| ||||||||||| ||||| | |||||||||| ||||||||||    
T  12121458 agatccaaataatagtaaaagctttcatagaattctttgagaaaccgcctagagcgcaaaactgattagcatgagtatataaattgtcattgagaac 12121554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 24819371 - 24819665
Alignment:
Q  28 acagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaa 127  Q
    ||||||||||||||| ||| | ||||||||||||||| ||   ||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||| |    
T  24819371 acagactttacaaaacagtctgtaaacaaggtaaaggattaattctccaatacgaataatcaaaaacgaacaagatgtaattagctttcaaccaccaata 24819470  T
Q  128 cgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaa 227  Q
     ||||| |||||||| |||||||| ||||| |||||| || || |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  24819471 tgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttggaaaatcctcctgttgcgaactttccatatagtatataagaccgaa 24819570  T
Q  228 atccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    |||||||| |||| ||| ||||||| |||||||||||||||||| || | ||| ||||||||||| ||||| |||||||||||||||||||||||    
T  24819571 atccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaaactgattagcatgagaatataaattgccattgagaac 24819665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 3483256 - 3483065
Alignment:
Q  14 caaaggcccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaa-cgaacaaaatgtagttagc 112  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  3483256 caaaggtccaaaaaacagactttacaaaatagtctgtaaacaaggtaaagggttttgtctccaataagaataataaaaaatcgaacaatatgtagttagc 3483157  T
Q  113 tttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctt 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3483156 tttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctgttgcgatctt 3483065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 25 - 315
Target Start/End: Complemental strand, 40892315 - 40892025
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    |||||||||||||||| | ||| | |||||||  ||| || |||||||||||| | | ||| | |||| |||||   |||||||||||||||||||||||    
T  40892315 aaaacagactttacaagacagtctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaacgtgatgtagttagctttcaaccacca 40892216  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    ||||||||| ||||| ||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40892215 aaacgtttgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctgttgcgatctttccatatagtaaataagacc 40892116  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||  |||  ||||| |||||||||||  |||||| ||||||||||||||    
T  40892115 gaaatccaaataatagtaaaagctttcatagaattctttgagaagtctcttagagcgcaaaactgattatcatgtgtatataaattgccat 40892025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 36575929 - 36575636
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    |||||||||||||| ||| | ||||||||||||||| ||   ||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||| |     
T  36575929 cagactttacaaaacagtctgtaaacaaggtaaaggattaattctccaatacgaataatcaaaaacgaacaagatgtaattagctttcaaccaccaatat 36575830  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaa 228  Q
    ||||| |||||||| |||||||| ||||| |||||| || || |||||||||| || ||||||||||||| ||||||||| |||||| ||||||||||||    
T  36575829 gtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttggaatatcctcctgttgcaatctttccaaatagtatataagaccgaaa 36575730  T
Q  229 tccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||||||| |||| ||| ||||||| |||||||||||||||||| || | ||| ||||||||||| ||||| |||||||||||||||||||||||    
T  36575729 tccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaaactgattagcatgagaatataaattgccattgagaac 36575636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 108 - 311
Target Start/End: Original strand, 586538 - 586741
Alignment:
Q  108 ttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttcc 207  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | | ||||||||||||| || ||||| | ||| ||||||||||    
T  586538 ttagctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagaacttccaattaatcaatttggttttggaatatccttcggtttcgatctttcc 586637  T
Q  208 atatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataa 307  Q
    |||||||||||||||||||||||||||||||||  || ||||||| | ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||    
T  586638 atatagtaaataagaccgaaatccaaataatagtgaaagctttcatataattctttgagaagcctccaagagcgcaaaactgattagcatgtgtatataa 586737  T
Q  308 attg 311  Q
    ||||    
T  586738 attg 586741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 21607909 - 21608136
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    |||||||||||||||| | ||  | |||||||  |||||| |||||||||||| | | ||||| |||| |||||   |||||||||||||||||||||||    
T  21607909 aaaacagactttacaagacagactgtaaacaacataaaggtttttgtctccaaaagggataatcaaaagcgaacgtgatgtagttagctttcaaccacca 21608008  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    ||||||||| ||||| |||||||||| |||| ||||||||||| ||||||||||||| |||||||||   ||||||||||| |||||| |||||||||||    
T  21608009 aaacgtttgaagtttaaccctttcaaaaagagcttccaaatgatcaatttggttttggaaaatcctcaatttgcgatcttttcatataataaataagacc 21608108  T
Q  225 gaaatccaaataatagaaaatgctttca 252  Q
    |||||||||||||||| ||| |||||||    
T  21608109 gaaatccaaataatagtaaaagctttca 21608136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 31252892 - 31253113
Alignment:
Q  28 acagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaa 127  Q
    ||||||||||||||| ||  | |||| |||||||| | ||   ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |    
T  31252892 acagactttacaaaacagcctgtaaataaggtaaatgattaattctccaatacgaataataaaaaacgaacaagatgtaattagctttcaaccaccaata 31252991  T
Q  128 cgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaa 227  Q
     ||||| |||||||| |||||||  ||||| |||||| || |  |||||||||| || ||||||||||||||||||||||| |||||| |||||||||||    
T  31252992 tgtttgaagtttgactctttcaaatagaacctccaaaagagcgctttggttttggaatatcctcctgttgcgatctttccaaatagtatataagaccgaa 31253091  T
Q  228 atccaaataatagaaaatgctt 249  Q
    |||||||| |||| ||| ||||    
T  31253092 atccaaatgatagtaaaagctt 31253113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 27278313 - 27278563
Alignment:
Q  65 gttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaa 164  Q
    |||||||||| || ||| ||| | |||| | ||||  ||| |||| ||||||||||||||| ||| ||| | ||| ||||||| ||||||| |||| | |    
T  27278313 gttttgtctctaaaaaggatagttaaaagcaaacatgatgaagtttgctttcaaccaccaatacgattgaaatttaacccttttaagaagagcttcaaga 27278412  T
Q  165 tgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttg 264  Q
    ||| |||| || ||||  |||||  | ||||||||||||||| |||||  |||||||||| ||| ||| ||||||| ||| ||| |   ||||||| |||    
T  27278413 tgatcaatgtgattttagaaaattatactgttgcgatctttcaatataacaaataagaccaaaacccatataatagtaaaagctgttctagaattccttg 27278512  T
Q  265 agaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||| ||||||||||||||||||| ||||||| || |||||||||||    
T  27278513 agaaacctgcaagagcacaaaactgattagcatgtgtatttaaattgccat 27278563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 315
Target Start/End: Complemental strand, 20706042 - 20705753
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    |||||||| |||||| | ||| | ||||||| |||||||||||||||||||| | ||||| | ||||   ||||  ||| | || |||||||||||||||    
T  20706042 aaacagacattacaagacagtctgtaaacaatgtaaagggttttgtctccaaaaggaatattcaaaattaaacatgatgaaatttgctttcaaccaccaa 20705943  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
     | ||  | ||||| |||||||||  |||| |||| | |||  ||  |||||| |||||||||||||| || ||||||||||| |||   ||||||||||    
T  20705942 taagtccgaagtttaaccctttcagaaagagcttcgagatgttcatgttggttctgaaaaatcctcctatttcgatctttccaaataacgaataagaccg 20705843  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    ||||||||||||||| ||| |||  |  ||| ||||| ||||| |||||||| |||||||||||||  | ||||||| ||||| ||||||    
T  20705842 aaatccaaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgcacaaaactgatgagtatgtgaaaataaagtgccat 20705753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 315
Target Start/End: Complemental strand, 20874086 - 20873797
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    |||||||| |||||| | ||| | ||||||| |||||||||||||||||||| | ||||| | ||||   ||||  ||| | || |||||||||||||||    
T  20874086 aaacagacattacaagacagtctgtaaacaatgtaaagggttttgtctccaaaaggaatattcaaaattaaacatgatgaaatttgctttcaaccaccaa 20873987  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
     | ||  | ||||| |||||||||  |||| |||| | |||  ||  |||||| |||||||||||||| || ||||||||||| |||   ||||||||||    
T  20873986 taagtccgaagtttaaccctttcagaaagagcttcgagatgttcatgttggttctgaaaaatcctcctatttcgatctttccaaataacgaataagaccg 20873887  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    ||||||||||||||| ||| |||  |  ||| ||||| ||||| |||||||| |||||||||||||  | ||||||| ||||| ||||||    
T  20873886 aaatccaaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgcacaaaactgatgagtatgtgaaaataaagtgccat 20873797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 315
Target Start/End: Complemental strand, 18815868 - 18815654
Alignment:
Q  101 aatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaa-tgaacaatttggttttgaaaaatcctcctgttgcg 199  Q
    ||||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||  |||  ||  |||  ||  || || | |||||| || ||||| ||    
T  18815868 aatgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaagaagt-cttgtaagctgatgaaaatgattattaaaaattctactgttacg 18815770  T
Q  200 atctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgt 299  Q
     |||||| | |||  ||||||||||||||||||||||||||| ||   | || | ||||| |||||||| ||||||||||||||||||||||||| |||     
T  18815769 gtctttctagataacaaataagaccgaaatccaaataatagataagaatgtccatgaattttttgagaaccctccaagagcacaaaactgatttgaatga 18815670  T
Q  300 gaatataaattgccat 315  Q
    | || |||||||||||    
T  18815669 gtatttaaattgccat 18815654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 27990312 - 27990212
Alignment:
Q  215 aaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgcca 314  Q
    ||||||||||||||||||||||||||| || | | ||   ||||| |||||||| ||||||||||||||||||||||||| ||| | |||||||| ||||    
T  27990312 aaataagaccgaaatccaaataatagagaaggttgtccttgaattttttgagaaccctccaagagcacaaaactgatttgaatgagtatataaatcgcca 27990213  T
Q  315 t 315  Q
    |    
T  27990212 t 27990212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 316
Target Start/End: Complemental strand, 45649653 - 45649421
Alignment:
Q  84 taataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaa 183  Q
    |||| |||| ||||||||||||| || ||||||| |||||||||| |||| ||||| | ||||||||||||| || | | |||| ||   || || ||||    
T  45649653 taatcaaaatcgaacaaaatgtaattcgctttcagccaccaaaacatttgaagtttaatcctttcaagaagagctccaagatgatcagagtgattctgaa 45649554  T
Q  184 aaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcaca 283  Q
    |||| |||| ||| | |||||| || ||    ||||| || |||||||||||||  | |||| || ||  ||| || |||||||||||||||||||||||    
T  45649553 aaattctccagtttctatcttttcaaatgacgaataaaacagaaatccaaataactgtaaatcctgtcctagacttttttgagaaacctccaagagcaca 45649454  T
Q  284 aaactgatttgcatgtgaatataaattgccatt 316  Q
    ||| ||| | ||||| || |||||||| |||||    
T  45649453 aaattgagtagcatgagagtataaattaccatt 45649421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 27868585 - 27868861
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    ||||| |||||||| ||| | |||||||  ||||| |||||  |||||| | ||||| | |||| ||||||  ||||| || ||||||||||||||| ||    
T  27868585 cagacattacaaaacagtctctaaacaaactaaagagtttttcctccaaaaggaatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaatac 27868684  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaa 228  Q
    ||||||| ||| | ||||||||||||| |||| | |||| |||| || |  ||||||||  ||||||| || |||||||       |||| |   | |||    
T  27868685 gtttggattttaatcctttcaagaagagcttctagatgatcaatgtgatgctgaaaaattatcctgtttcggtctttcc-------aaatga---caaaa 27868774  T
Q  229 tccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||||||| |||   | ||  ||| ||||||||||||||||||| ||||||||| ||||| ||||| |||| |||||| ||||    
T  27868775 tccaaataatagtaaaacttgtcctagagttctttgagaaacctccaaaagcacaaaattgattagcatgagaatgtaaattaccat 27868861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 47553024 - 47553251
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| ||||||||||||| || ||||||| ||||||||||||||| ||||| | ||||||||| ||| | || | |||| |||  || || ||||||||     
T  47553024 aaaatcgaacaaaatgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagcagagcgtcaagatgatcaaaatgattctgaaaaatt 47553123  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    |||||||| | ||||||||| ||    ||||| || |||||||| ||||  | |||  || ||  ||| || || ||||||||||||||||||| ||| |    
T  47553124 ctcctgtttctatctttccaaatgacgaataaaactgaaatccagataactgtaaaacctgtcctagactttttagagaaacctccaagagcactaaatt 47553223  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  47553224 gagtagcatgagagtataaattaccatt 47553251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 8457559 - 8457467
Alignment:
Q  201 tctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgattt 293  Q
    |||||||| |||  ||||||||||||||||||||||||| | ||  || ||   ||||| |||||||| ||||||||||||||||||||||||    
T  8457559 tctttccagataacaaataagaccgaaatccaaataataaagaagactgtccttgaattttttgagaaccctccaagagcacaaaactgattt 8457467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 22866228 - 22866164
Alignment:
Q  96 aacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttc 160  Q
    |||| |||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| ||||    
T  22866228 aacataatgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttc 22866164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 5196380 - 5196519
Alignment:
Q  101 aatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcga 200  Q
    ||||||||  ||||||||||||||| |||||| |||||| ||| |||| | |||  || | |  ||| |||| |  || |||||||| ||||||||| ||    
T  5196380 aatgtagtgcgctttcaaccaccaatacgtttagagtttaaccttttctacaagcgctgcaagctgatcaatctaattgtgaaaaattctcctgttgtga 5196479  T
Q  201 tctttccatatagtaaataagaccgaaatccaaataatag 240  Q
    ||||| || |||  ||||||| ||| ||||||||||||||    
T  5196480 tcttttcaaataacaaataaggccgcaatccaaataatag 5196519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 10462692 - 10462391
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10462692 ccaaaaaacagactttacaaaatattctgtaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaatatgtagttagctttcaacc 10462593  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  10462592 accaaaacgtttggagtttaaccctttcaagaagaacttccaaatgaacaatttggttttggaaaatcctcctattgcgatctttccatatagtaaataa 10462493  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgaga 320  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10462492 gaccgaaatccaaataatagtaaatgctttcacagaattctttgagaaacctccaagagcacaaatctggtttgcatgtgaatataaattgccattgaga 10462393  T
Q  321 ac 322  Q
    ||    
T  10462392 ac 10462391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 5825525 - 5825223
Alignment:
Q  20 cccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaac 119  Q
    |||||||||||||||||||| |||||| | ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5825525 cccaaaaaacagactttacacaatagtttgtaaacaatgtaaaggattttgcctccaataagaataataaaaaacgaacaatatgtagttagctttcaac 5825426  T
Q  120 caccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaata 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5825425 caccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttgaaaaatcctcctgttgcgatctttccaaatagtaaata 5825326  T
Q  220 agaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgag 319  Q
    ||||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  5825325 agaccgaaatccaaataatagaaaaagcttgcacataatgctttgagaaaccgccaagtgcacaaaactgattagcatgtgaatataaattgccattaag 5825226  T
Q  320 aac 322  Q
    |||    
T  5825225 aac 5825223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 6679131 - 6678830
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    ||||||||||||||||||| |||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6679131 ccaaaaaacagactttacacaatagtctgtaaacaaggtaaaggattttgcctccaataagaataataaaaaacgaacaatatgtagttagctttcaacc 6679032  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  6679031 accaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaatagtaaataa 6678932  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgaga 320  Q
    |||||||||||||||||||||||| |||| || ||| | ||||||||  |||||||| |||||||||||||| ||||||||||| |||||| ||||||||    
T  6678931 gaccgaaatccaaataatagaaaaagcttgcacagagtgctttgagactcctccaagtgcacaaaactgattagcatgtgaataaaaattgtcattgaga 6678832  T
Q  321 ac 322  Q
    ||    
T  6678831 ac 6678830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 106 - 315
Target Start/End: Original strand, 27891450 - 27891659
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| ||||||||||||||| | ||||| ||||| |||||||||| |||| |||  | |||  |||||||||| ||||||||||||||||||||||||||    
T  27891450 agtttgctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagctttgagatgttcaatttggttctgaaaaatcctcctgttgcgatcttt 27891549  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    ||| |||  |||||||||| ||||||| ||||||| ||| | | ||  ||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||    
T  27891550 ccaaataacaaataagacctaaatccatataatagtaaaagatgtcctagacttctttgagaaccctccaagagcacaaaactgattagcatgtgaaaat 27891649  T
Q  306 aaattgccat 315  Q
    | ||||||||    
T  27891650 atattgccat 27891659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 300
Target Start/End: Original strand, 11265782 - 11265971
Alignment:
Q  111 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccata 210  Q
    ||||||||||||||| | ||||| ||||| ||||||||||| ||| |||| | |||| | |  || |  ||||||||||||||||| ||||||||||| |    
T  11265782 gctttcaaccaccaataagtttgaagtttaaccctttcaaggagagcttcaagatgatccaaatgatgctgaaaaatcctcctgttacgatctttccaaa 11265881  T
Q  211 tagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtg 300  Q
    ||  |||||||||||||||||||||||||| ||| ||||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  11265882 taacaaataagaccgaaatccaaataatagtaaaagctttcatagacttccttgagaaacctccaagagcacaaaactgattagcatgtg 11265971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 286
Target Start/End: Original strand, 38931499 - 38931701
Alignment:
Q  84 taataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaa 183  Q
    |||| |||| ||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||| | |||| |||  || || ||||    
T  38931499 taatcaaaatcgaacaaaatgtaattcgctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttcaagatgatcaaagtgattctgaa 38931598  T
Q  184 aaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcaca 283  Q
    |||| |||||||| | ||||||||| ||  | ||||| ||||||||||||||||  | |||  || ||  ||| || |||||||||||||||||||||||    
T  38931599 aaattctcctgtttctatctttccaaatgatgaataaaaccgaaatccaaataactgtaaaacctgtcctagagttttttgagaaacctccaagagcaca 38931698  T
Q  284 aaa 286  Q
    |||    
T  38931699 aaa 38931701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 315
Target Start/End: Complemental strand, 31963213 - 31962933
Alignment:
Q  35 ttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttgg 134  Q
    |||||||| ||| |||||||||  |||||||||||   ||||| | | ||| | |||| | ||||  ||||| || ||||||||||||||| ||||||||    
T  31963213 ttacaaaacagtctttaaacaaactaaagggtttttcgtccaaaagggatagtcaaaatcaaacatgatgtaattcgctttcaaccaccaatacgtttgg 31963114  T
Q  135 agtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaa 234  Q
    | ||| ||||||||||||||| |||| | |||| |||| || |  |||||||| |||||||| || |||||||| ||   |||||  ||||||||| |||    
T  31963113 attttaaccctttcaagaagagcttctagatgatcaatgtgatgctgaaaaattctcctgtttcggtctttccaaatgacaaatagtaccgaaatcgaaa 31963014  T
Q  235 taatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||| |||  || ||  ||| ||||||||||||||||||||| ||||||| ||||| ||||| |||| |||||| ||||    
T  31963013 taatagtaaaacctgtcctagagttctttgagaaacctccaagaccacaaaattgattagcatgagaatgtaaattaccat 31962933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 3998524 - 3998600
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaa 100  Q
    ||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3998524 aaaaacagactctacaaaacagtctgtaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaa 3998600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 311
Target Start/End: Original strand, 29150057 - 29150262
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| |||||||||||| || ||||||| ||||| |||||||||| |||| |||| | |||| |||  || ||||| |||||  | || || ||||||||    
T  29150057 agtttgctttcaaccacgaatacgtttgaagtttaaccctttcaataagagcttcaagatgatcaaagtgattttggaaaatttttctctttcgatcttt 29150156  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    |||||||  | |||||| | ||||||||||||||| ||| ||| ||  |||| |||||||||| |  || ||||||||||||||||| ||||| | || |    
T  29150157 ccatataacatataagatcaaaatccaaataatagtaaacgctatcgtagaactctttgagaagctaccgagagcacaaaactgattagcatgagtattt 29150256  T
Q  306 aaattg 311  Q
    ||||||    
T  29150257 aaattg 29150262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 286
Target Start/End: Original strand, 8895126 - 8895316
Alignment:
Q  96 aacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgt 195  Q
    ||||||||||| || |||||||||||| ||| |||||| ||||| ||||||||||||||| |||  | |||| | |  || || |||||||| |||||||    
T  8895126 aacaaaatgtaattcgctttcaaccactaaaccgtttgaagtttaaccctttcaagaagagctttaagatgatctaagtgattctgaaaaattctcctgt 8895225  T
Q  196 tgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaa 286  Q
    | | ||||||||| ||    ||||| || |||||||||||||  | |||  || ||  |||||| ||||||||||||||||||||||||||    
T  8895226 ttctatctttccaaatgacgaataaaactgaaatccaaataactgtaaaacctgtcctagaattttttgagaaacctccaagagcacaaaa 8895316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 29322528 - 29322599
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttc 160  Q
    |||| |||||| ||| || || ||||||| ||||||||||||||| ||||| | ||||||||||||| ||||    
T  29322528 aaaatcgaacataatataattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttc 29322599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 17154360 - 17154061
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgt-ctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccac 122  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  17154360 aaaaacagactttacaaaacagtctgtaaacaaggtaaagggtttttttctccaataagaataataaaaaacgaacaatacgtagttagctttcaaccac 17154261  T
Q  123 caaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataaga 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  17154260 caaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctgttgcaatctttccatatagtaaataaga 17154161  T
Q  223 ccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  17154160 ctgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcgcaaaactgatttgcatgtgaatataaattgtcattgagaac 17154061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 53152640 - 53152339
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  53152640 ccaaaaaacagactttacacaatagtctgtaaacaaggtaaagggttttgcctccaataagaataatcaaaaacgaacaatatgtagttagctttcaacc 53152541  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  53152540 accaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaatagtaaataa 53152441  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgaga 320  Q
    |||||||||||||||||||||||| |||| || ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  53152440 gaccgaaatccaaataatagaaaaagcttgcacagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataaattgtcattgaga 53152341  T
Q  321 ac 322  Q
    ||    
T  53152340 ac 53152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 23572172 - 23571881
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    |||| ||||||||||||| ||| | |||||||  ||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  23572172 aaaagagactttacaaaacagtctgtaaacaacataaggggttttgtctccaataaggataataaaaaacgaacaagatgcagttagctttcaaccacca 23572073  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||    
T  23572072 aaacgtttgaagtttgaccctttcaattagaacttccaaatgaacaatttggttttggaaaatcctcctgttgcgatctttccatatagaaaataatacc 23571973  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccatt 316  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  23571972 gaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaaaagcacaaaactgattagcatgtgtatataaattgccatt 23571881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 32945557 - 32945786
Alignment:
Q  20 cccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaac 119  Q
    |||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  32945557 cccaaaaaacagactttacacaatagtctgtaaacaaggtaaaaggttttgtctccaataagaataataaaaaacgaacaatatgtagttaactttcaac 32945656  T
Q  120 caccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  32945657 caccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaatagtaaata 32945756  T
Q  220 agaccgaaatccaaataatagaaaatgctt 249  Q
    ||||||||||||||||||||||||| ||||    
T  32945757 agaccgaaatccaaataatagaaaaagctt 32945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 54 - 322
Target Start/End: Original strand, 3514384 - 3514652
Alignment:
Q  54 caaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaa 153  Q
    ||||||| ||| || | ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |    
T  3514384 caaggtataggattatttcttcaataagagtaataaaaaacgaacaagatgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagta 3514483  T
Q  154 gaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaa 253  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||| |||||||     
T  3514484 gaacctccaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccaaatagtatataagaccgagatccaaataatagtaaaagctttcat 3514583  T
Q  254 agaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||| | |||||||||||||||||||||    
T  3514584 agaattctttgagaaacctcctagagcgcaaaactgattagcatgagtatataaattgccattgagaac 3514652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 9818733 - 9819028
Alignment:
Q  29 cagactttacaaaatagtatttaaa--caaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaa 126  Q
    |||||||||||||| ||| | ||||  ||||||||| | ||   ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||     
T  9818733 cagactttacaaaacagtctgtaaaaacaaggtaaatgattaattctccaatacgaataataaaaaacgaacaagatgtaattagctttcaaccaccaat 9818832  T
Q  127 acgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccga 226  Q
    | ||||| |||||||| |||||||| ||||| |||||| || || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  9818833 atgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttgaaaaatcctcctgttgcgatcttcccatatagtatataagaccga 9818932  T
Q  227 aatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||||||||| |||| ||| ||||||| | |||||||||||||||| || | ||| ||||||||||| ||||| |||||||||||||||||||||||    
T  9818933 aatccaaatgatagtaaaagctttcataaaattctttgagaaaccacctaaagcgcaaaactgattagcatgagaatataaattgccattgagaac 9819028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 48547225 - 48547513
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    ||||||||| |||||  | ||| | ||||||| |||| || |||||||||||| ||| ||||| |||| |||||   ||| |||| ||||||||||||||    
T  48547225 aaaacagacattacatgacagtctgtaaacaatgtaacggattttgtctccaaaaaggataatcaaaagcgaacgtgatgaagtttgctttcaaccacca 48547324  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    | | ||||| ||||| |||||||||| |||| |||| | |||  |||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||    
T  48547325 ataagtttgaagtttaaccctttcaaaaagagcttcgagatgttcaatttggttctgaaaaatcctcctgttgcgatctttccaaataacaaataagacc 48547424  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgcc 313  Q
    |||||||| ||||||| ||| | | ||  ||| ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  48547425 gaaatccatataatagtaaaagttgtcctagacttctttgagaaacctccaagagcacaaaactgattagcatgtgaaattaaattgcc 48547513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 315
Target Start/End: Original strand, 42462390 - 42462681
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    |||||||||| |||||| | ||| | |||||||  |||  | ||||||||||||   | ||||| |||| ||||||  ||| ||||||||||||||||||    
T  42462390 aaaaacagacattacaagacagtctataaacaacataagagattttgtctccaaatgggataatcaaaagcgaacatgatgaagttagctttcaaccacc 42462489  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagac 223  Q
    |||| ||||| ||||| ||||||||||||||| |||| | ||||    | |||||||| ||||||||| ||||||||||||| || |||  |||||||||    
T  42462490 aaaaagtttgaagtttaaccctttcaagaagagcttcaagatgattcgtatggttttggaaaatcctcatgttgcgatcttttcaaataacaaataagac 42462589  T
Q  224 cgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    ||||||||||||||||| |||  |||||| | |||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  42462590 cgaaatccaaataatagtaaaacctttcatataattctttgaaaagcctccaagagcacaaaactgattagcatgtgtatataaattgccat 42462681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 44879665 - 44879790
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||    
T  44879665 aaaaacagactttacaaaacagtatgtaaacaaggtaaaggattttgtctccaataagaataatcaaaaacgaacaatatgtagttagttttcaaccacc 44879764  T
Q  124 aaaacgtttggagtttgaccctttca 149  Q
    |||||||||| |||||||||||||||    
T  44879765 aaaacgtttgaagtttgaccctttca 44879790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 9246703 - 9246901
Alignment:
Q  28 acagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaa 127  Q
    ||||||||||||||| ||  | ||||||||||||||| ||   ||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||| |    
T  9246703 acagactttacaaaacagcctgtaaacaaggtaaaggattaattctccaatacgaataatcaaaaacgaacaagatgtaattagctttcaaccaccaata 9246802  T
Q  128 cgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccga 226  Q
     ||||| |||||||| |||||||| ||||| |||||| ||||| |||||||||| || |||||||||||| |||||||| | |||||| ||||||||||    
T  9246803 tgtttgaagtttgactctttcaagtagaacctccaaaagaacactttggttttggaatatcctcctgttgtgatctttctaaatagtatataagaccga 9246901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 113 - 315
Target Start/End: Original strand, 30737247 - 30737449
Alignment:
Q  113 tttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatata 212  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||| | |||| |||| || ||||| ||||| ||||| ||||||||||| ||||||    
T  30737247 tttcaaccaccaatacgtttgaagtttaaccctttcaagaagagcttcaagatgatcaatgtgattttggaaaattctcctcttgcgatcttttcatata 30737346  T
Q  213 gtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgc 312  Q
      |||||||||||||||||| ||||||| ||| | | ||  ||| |||||||||||||||||||||| |||||||||||| ||||||| || ||||| ||    
T  30737347 acaaataagaccgaaatccatataatagtaaaagttgtcctagagttctttgagaaacctccaagagtacaaaactgattcgcatgtgtatgtaaatcgc 30737446  T
Q  313 cat 315  Q
    |||    
T  30737447 cat 30737449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 8542253 - 8542381
Alignment:
Q  102 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgat 201  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||| |||| ||||||||||||| |||||||||||||| ||||    
T  8542253 atgtagttagctttcaaccaccaaaacgttcgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctgttacgat 8542352  T
Q  202 ctttccatatagtaaataagaccgaaatc 230  Q
    ||||| ||||||||||||||||| |||||    
T  8542353 ctttcaatatagtaaataagaccaaaatc 8542381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 315
Target Start/End: Original strand, 23602936 - 23603224
Alignment:
Q  27 aacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaa 126  Q
    ||||||| ||||| || ||| | |||||||  |||||| |||||||||||| | | ||||| ||||  |||    ||| |||| ||||||| ||||||||    
T  23602936 aacagacattacataacagtctgtaaacaacataaaggattttgtctccaaaagggataatcaaaactgaaggtgatggagtttgctttcatccaccaaa 23603035  T
Q  127 acgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccga 226  Q
    | ||||| ||||| ||| ||||||||||| |||| | |||| | || | |||||| |||||| ||  ||||||||||||||| |||  |||||| | |||    
T  23603036 aggtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatcttcaagttgcgatctttccaaataacaaataaaatcga 23603135  T
Q  227 aatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    ||||||||||||||| |  ||||||| |||||||||||| || ||||||||||||||||||||| | ||||| | ||||||||||||||    
T  23603136 aatccaaataatagacagagctttcatagaattctttgaaaatcctccaagagcacaaaactgaatagcatgaggatataaattgccat 23603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 316
Target Start/End: Original strand, 10753781 - 10754025
Alignment:
Q  72 ctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaa 171  Q
    |||||||||| ||| | |||| ||||||| ||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| |  ||| |||    
T  10753781 ctccaataaggatagtcaaaatcgaacaagatgtaattcgctttcaaccaccaaaacgtctggagtttaaccctttcaagaagaacttcaagctgatcaa 10753880  T
Q  172 tttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacc 271  Q
     ||| |  |||||||| || ||||| | ||| ||||||||   |||||| ||||||||||||||||||| |||  || ||| ||| || || || |||||    
T  10753881 attgttgctgaaaaattcttctgtttctatccttccatatgacaaataaaaccgaaatccaaataatagtaaaacctgtcacagattttttcgaaaaacc 10753980  T
Q  272 tccaagagcacaaaactgatttgcatgtgaatataaattgccatt 316  Q
    ||||||||| ||||| ||    |||||||||| |||||| |||||    
T  10753981 tccaagagcgcaaaattgggaagcatgtgaatgtaaattaccatt 10754025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 315
Target Start/End: Complemental strand, 42459807 - 42459553
Alignment:
Q  60 aaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaactt 159  Q
    ||||| |||||||||||| ||| | | | ||||||||||   ||  |||| ||||||||||||||| ||||||| ||||| |||||| | | |||| |||    
T  42459807 aaaggattttgtctccaaaaaggacagtcaaaaacgaacgtgataaagtttgctttcaaccaccaatacgtttgaagtttaacccttaccataagagctt 42459708  T
Q  160 ccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatt 259  Q
    | | |||| |||  || ||||||||| || |||||||||||||||||||||||  | |||||||||||||||||||||||| ||| |||  || | || |    
T  42459707 caagatgatcaaaatgattttgaaaattc-tcctgttgcgatctttccatataacatataagaccgaaatccaaataatagtaaacgctaacatataact 42459609  T
Q  260 ctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    | ||||||| || || ||||||||||||||||| ||||| |||| |||||| ||||    
T  42459608 ccttgagaagccaccgagagcacaaaactgattagcatgagaatgtaaattaccat 42459553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 311
Target Start/End: Original strand, 8594963 - 8595214
Alignment:
Q  60 aaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaactt 159  Q
    ||||| |||||||||||| | | ||||| ||||  ||||  |||| |||  ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||    
T  8594963 aaaggattttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatccaccaaaaggtttgaagtttaaccttttcaagaagagctt 8595062  T
Q  160 ccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatt 259  Q
    | | || | | || |||||||| |||||| || | |||||||||||||| |||  |||||| ||||||||||||| |||||| || ||||||  |||| |    
T  8595063 caagataacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaacaatagacaaagctttcgtagaact 8595162  T
Q  260 ctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattg 311  Q
    |||||| |||| |||||| |||||||| || || ||||| | || |||||||    
T  8595163 ctttgaaaaacatccaagggcacaaaattggttagcatgggtatgtaaattg 8595214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 316
Target Start/End: Complemental strand, 39633379 - 39633092
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    ||||| |||||||  ||| | ||||||| ||||||| ||||| |||||||| | ||| | |||| ||||||  ||||| || ||||||||||||||||||    
T  39633379 cagacattacaaagcagtttgtaaacaaagtaaaggattttgcctccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaaaac 39633280  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaa 228  Q
    ||||||||||| ||||||||||| ||| |||| | |||| |||  || |  |||||||| || ||||| | ||||||||| ||    ||||| |  ||||    
T  39633279 gtttggagtttaaccctttcaagtagagcttcaagatgatcaaagtgatgctgaaaaattctgctgtttctatctttccaaatgacgaataaaattgaaa 39633180  T
Q  229 tccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccatt 316  Q
    |||||||||||| |||  || ||  ||| || || || ||||| |||||||||||||| | |   |||||||||| |||||| |||||    
T  39633179 tccaaataatagtaaaacctgtcctagagtttttcgaaaaacccccaagagcacaaaattaagaagcatgtgaatgtaaattaccatt 39633092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 16663711 - 16663938
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| |||||| |||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| | |||| ||| ||| || ||||||||     
T  16663711 aaaatcgaacataatgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaattgattctgaaaaatt 16663810  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    || ||||| | ||||||||| ||    ||||| || |||||||| ||||  | |||  || ||  |||  | |||||||||||||||||||||||||| |    
T  16663811 cttctgtttctatctttccaaatgacgaataaaactgaaatccagataactgtaaaacctgtcctagacatttttgagaaacctccaagagcacaaaatt 16663910  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  16663911 gagtagcatgagagtataaattaccatt 16663938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 52196022 - 52196249
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| |||||| |||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| | |||| ||   || || ||||||||     
T  52196022 aaaatcgaacataatgtaatttgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcagagtgattctgaaaaatt 52196121  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    || ||||| | ||||||||| ||    ||||| || |||||||| ||||  | |||| || ||  ||| || |||||||||||||||||||||||||| |    
T  52196122 cttctgtttctatctttccaaatgacgaataaaacagaaatccagataactgtaaatcctgtcctagacttttttgagaaacctccaagagcacaaaatt 52196221  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  52196222 gagtagcatgagagtataaattaccatt 52196249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 52962633 - 52962710
Alignment:
Q  71 tctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttc 148  Q
    |||||||| ||| |||| |||| |||||||||||||||    ||||||||||||||||| ||||||||| ||| ||||    
T  52962633 tctccaatcagagtaatcaaaatcgaacaaaatgtagtacaatttcaaccaccaaaacgattggagtttaaccttttc 52962710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 28393365 - 28393405
Alignment:
Q  201 tctttccatatagtaaataagaccgaaatccaaataataga 241  Q
    |||||||| |||  |||||||||||||||||||||||||||    
T  28393365 tctttccagataacaaataagaccgaaatccaaataataga 28393405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 2960145 - 2959847
Alignment:
Q  21 ccaaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaacc 120  Q
    ||||||||||||||||||| |||||| | |||||||| ||| |||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  2960145 ccaaaaaacagactttacacaatagtttgtaaacaagataatgggttttgcctccaataagaataatcaaaaacgaacaatatgtagttcgctttcaacc 2960046  T
Q  121 accaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataa 220  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  2960045 accaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctgttacgatctttccaaatagaaaataa 2959946  T
Q  221 gaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgag 319  Q
    |||||||||||||||||||||||| | || || ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  2959945 gaccgaaatccaaataatagaaaaagtttacatagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataagtttccattgag 2959847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 26078278 - 26077980
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    ||||||||||||||||| | ||| | ||| |||| |||||| || | |||||||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  26078278 aaaaacagactttacaacacagtctgtaagcaagctaaaggattatttctccaataagagtaatcaaaaacgaacaagatgtagttagctttcaaccacc 26078179  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagac 223  Q
    |||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||| || |||||||||||||||||||||||||| |||||| |||||||    
T  26078178 aaaacgtttgaagtttgactctttcaagaagaacatccaaaagaacaatatggttatggaaaatcctcctgttgcgatctttccaaatagtatataagac 26078079  T
Q  224 cgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| ||||||||||| ||||| | |||||||||||||||||||||    
T  26078078 cgagatccaaataatagaaaaagctttcatagaattctttgagaaccctcctagagcgcaaaactgattagcatgagtatataaattgccattgagaac 26077980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 31423766 - 31423480
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    ||||||||| |||||  ||||| | |||||||  ||| || |||||||||||| | | ||| | |||| |||||    || |||| ||||||||||||||    
T  31423766 aaaacagacattacatgatagtctgtaaacaacataatggattttgtctccaaaagggatagtcaaaagcgaacgtgctgaagtttgctttcaaccacca 31423667  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    | | ||||| ||||| |||||||||| |||| |||| | |||| ||||||||||||| ||||||||||||||||||||||| || |||  ||||||||||    
T  31423666 ataagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttggttttggaaaatcctcctgttgcgatcttttcaaataacaaataagacc 31423567  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattg 311  Q
    |||||||| ||||||| ||| | | ||  ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  31423566 gaaatccatataatagtaaaagttgtcctagagttctttgagaaacctccaagagcacaaaactgattagcatgtgaatttaaattg 31423480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 26390751 - 26390518
Alignment:
Q  66 ttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaat 165  Q
    |||||||||||| | ||||||| |||| ||||||  ||  |||  ||||||||||||||||||||||| || || | ||||||||||||| | || | ||    
T  26390751 ttttgtctccaaaaggaataatcaaaagcgaacatgataaagtgtgctttcaaccaccaaaacgtttgaagcttaatcctttcaagaagagcctctagat 26390652  T
Q  166 gaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttga 265  Q
    || || | || ||||| ||||| ||||||||||||||||||||||||  ||||||||| ||| |||||||||||| ||| | | ||  ||||||||||||    
T  26390651 gatcactgtgattttggaaaattctcctgttgcgatctttccatataacaaataagacagaagtccaaataatagtaaaagttgtcctagaattctttga 26390552  T
Q  266 gaaacctccaagagcacaaaactgatttgcatgt 299  Q
    |||||| || || ||||||||||| || ||||||    
T  26390551 gaaaccaccgagggcacaaaactggttagcatgt 26390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 299
Target Start/End: Original strand, 29529870 - 29530118
Alignment:
Q  50 taaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttca 149  Q
    |||||||  |||||| ||||||||| || | ||||||| |||| ||||||  ||  |||| ||||||||||||||||| ||||| || || |||||||||    
T  29529870 taaacaacttaaaggattttgtctctaaaaggaataatcaaaagcgaacatgataaagtttgctttcaaccaccaaaatgtttgaagcttaaccctttca 29529969  T
Q  150 agaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctt 249  Q
    |||||| | || | |||| || | || ||||| ||||| || ||||| |||||||||||||||  ||||||||| ||| |||| ||||||| ||| | |     
T  29529970 agaagagcatctagatgatcactgtgattttggaaaattcttctgttacgatctttccatataacaaataagacagaagtccagataataggaaa-gttg 29530068  T
Q  250 tcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgt 299  Q
    ||  ||||||||||||||||||| |||| |||||||||||||| ||||||    
T  29530069 tcctagaattctttgagaaacctacaagggcacaaaactgattagcatgt 29530118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 10802168 - 10801940
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| |||||| |||||| || ||||||| ||||||||||||||| ||||| | ||||||||| ||| | || | |||| ||   || || ||||||||     
T  10802168 aaaatcgaacataatgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagcagagcgtcaagatgatcagaatgattctgaaaaatt 10802069  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattcttt-gagaaacctccaagagcacaaaac 287  Q
    |||||||| | ||||||||| ||    ||||| || |||||||| ||||  | |||  || ||  ||| || ||| ||||||||||||||||||| |||     
T  10802068 ctcctgtttctatctttccaaatgacgaataaaactgaaatccagataactgtaaaacctgtcctagacttttttagagaaacctccaagagcactaaat 10801969  T
Q  288 tgatttgcatgtgaatataaattgccatt 316  Q
    ||| | ||||| || |||||||| |||||    
T  10801968 tgagtagcatgagagtataaattaccatt 10801940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 18295946 - 18295650
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    ||||||||||||||| | ||| | ||||||||||||||| || | |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  18295946 aaacagactttacaacacagtctgtaaacaaggtaaaggattatttctccaataagagtaatcaaaaacgaacaagatgtagttagctttcaaccaccaa 18295847  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
    |||||||| |||||||| |||||||  ||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||    
T  18295846 aacgtttgaagtttgactctttcaaatagaacctccaaaagaacaatttggttttggaaaatcctcttgttgcgatctttccatatagtatataaggccg 18295747  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    | ||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||  | |||||||||||||||||||||    
T  18295746 agatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaactgattagcattagtatataaattgccattgagaac 18295650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 24 - 322
Target Start/End: Original strand, 2893907 - 2894205
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||   ||||||||| |||||||||||||||||||| ||| | ||||||||||| ||||    
T  2893907 aaaaacagactttacaaaacagtctgtaaacaaggtaaaggattaattctccaatacgaataataaaaaacgaacaagatgaaattagctttcaaacacc 2894006  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagac 223  Q
    || | |||||||||||||| |||||||| ||||  |||||| || || |||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||    
T  2894007 aatatgtttggagtttgactctttcaagtagaaactccaaaagagcactttgattttggaaaatcctcctgttgcggtcttttcatatagtatataagac 2894106  T
Q  224 cgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    |||||||||||| |||| ||| |||| || ||||||||||||||| || || ||||| ||||||||||  ||||| |||||||||||||||||||||||    
T  2894107 cgaaatccaaatgatagtaaaagcttgcatagaattctttgagaacccacctagagcgcaaaactgatgagcatgagaatataaattgccattgagaac 2894205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 106 - 313
Target Start/End: Original strand, 667016 - 667222
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| ||||||||||||||| |  |||| ||||  || |||||||||||| |||| |||||| | || |||||||| |||||||||||||||||||||||    
T  667016 agtttgctttcaaccaccaatatctttgaagtta-acgctttcaagaagagcttcaaaatgatccatatggttttggaaaatcctcctgttgcgatcttt 667114  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    |||||||  |||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| || |    
T  667115 ccatataacaaataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaacctccaagagcacaaaactgattagcatgtgtattt 667214  T
Q  306 aaattgcc 313  Q
    ||||||||    
T  667215 aaattgcc 667222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 28605440 - 28605148
Alignment:
Q  23 aaaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccac 122  Q
    ||||||||||| |||||  | ||| | ||||||| |||||||||||||||||||| ||||||| | |||| ||||||  | | |||| |||||||||| |    
T  28605440 aaaaaacagacattacatgacagtctgtaaacaatgtaaagggttttgtctccaaaaagaatagtcaaaagcgaacatgacgaagtttgctttcaaccgc 28605341  T
Q  123 caaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataaga 222  Q
    ||| |  | || ||||| |||||||||| |||| |||| | |||  || ||||||| ||||||||||||||||| ||||||||||| |||  ||||||||    
T  28605340 caataattctgaagtttaaccctttcaaaaagagcttcaagatgttcattttggttctgaaaaatcctcctgttacgatctttccaaataacaaataaga 28605241  T
Q  223 ccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||||||||||||| ||| ||| ||| ||| ||||| ||||| ||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  28605240 ccgaaatccaaataatagtaaaagctgtcatagacttcttggagaaccctccaagagcacaaaactgatgagcatgtgaaaatagattgccat 28605148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 5392004 - 5391777
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    |||| ||||||||||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| | |||| ||   || || ||||||||     
T  5392004 aaaatcgaacaaaatgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcagagtgattctgaaaaatt 5391905  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaact 288  Q
    |||||||| | ||||||||| ||    ||||| || |||||||| ||||  | |||| || ||  ||| || |||||||||||||||||||||||||| |    
T  5391904 ctcctgtttctatctttccaaatgacgaataaaacagaaatccatataactgtaaatcctgtcctagacttttttgagaaacctccaagagcacaaaatt 5391805  T
Q  289 gatttgcatgtgaatataaattgccatt 316  Q
    || | ||||| || |||||||| |||||    
T  5391804 gagtagcatgagagtataaattaccatt 5391777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 17227675 - 17227814
Alignment:
Q  101 aatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcga 200  Q
    |||| |||| ||||||||||||||| ||||||||||||| ||||||| ||||||| || | |  | | |||| || ||||||||||| ||  ||||||||    
T  17227675 aatgaagttcgctttcaaccaccaatacgtttggagtttaacccttttaagaagagctgcaagctaatcaatgtgattttgaaaaattcttttgttgcga 17227774  T
Q  201 tctttccatatagtaaataagaccgaaatccaaataatag 240  Q
    |||||||| |||  |||||| |||||||||||||||||||    
T  17227775 tctttccaaataacaaataacaccgaaatccaaataatag 17227814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 7218820 - 7218686
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| ||||||||||||||| ||| ||| ||||| ||| |||| | |||| |||| | ||||||||  || |||||||| || ||||| |||||||||||    
T  7218820 agtttgctttcaaccaccaatacgcttgaagtttaaccttttccaaaagagcttcaagatgaacaacctgtttttgaaatattctcctattgcgatcttt 7218721  T
Q  206 ccatatagtaaataagaccgaaatccaaataatag 240  Q
    |||||||  | |||| |||||||||||||| ||||    
T  7218720 ccatataacatataaaaccgaaatccaaatgatag 7218686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 102 - 300
Target Start/End: Complemental strand, 9759977 - 9759779
Alignment:
Q  102 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgat 201  Q
    ||||| || ||||||||||||||| || |||| ||||| |||||  |||||||| | || | |||| ||||||| |||||||| || |||||||| ||||    
T  9759977 atgtaattcgctttcaaccaccaatacatttgaagtttaaccctcccaagaagagcatcaagatgatcaatttgattttgaaatattctcctgttacgat 9759878  T
Q  202 ctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtg 300  Q
    ||||||| |||  ||||||   ||||||||| |||  || |||  |  ||  ||| |||||||||||||||||||||| |||||| || || |||||||    
T  9759877 ctttccaaataacaaataatgtcgaaatccatatagcagtaaagcccgtcctagagttctttgagaaacctccaagaggacaaaattggttagcatgtg 9759779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 14223656 - 14223505
Alignment:
Q  89 aaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatc 188  Q
    ||||||||||   ||| |||| ||||| ||||||||| ||||||| ||||| ||| |||| | |||| |||||| |||| |||  || ||| | |||||     
T  14223656 aaaaacgaacgtgatgaagtttgcttttaaccaccaatacgtttgaagtttaaccgtttccataagagcttccagatgatcaaagtgatttcggaaaatt 14223557  T
Q  189 ctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatag 240  Q
    ||| |||||||||| |||||||||  | |||||||| |||||||||||||||    
T  14223556 ctcttgttgcgatcattccatataacatataagaccaaaatccaaataatag 14223505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 102 - 316
Target Start/End: Complemental strand, 41343282 - 41343068
Alignment:
Q  102 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgat 201  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  41343282 atgtagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggttttggaaaatcctcctattgcgat 41343183  T
Q  202 ctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtga 301  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||| ||     
T  41343182 ctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaactgattagcatttgt 41343083  T
Q  302 atataaattgccatt 316  Q
    |||||||||||||||    
T  41343082 atataaattgccatt 41343068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 10003603 - 10003899
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||   ||||||||| ||||||| |||||||||||| ||||| |||||||| |||||||||    
T  10003603 aaacagactttacaaaacagtctgtaaacaaggtaaaggattaattctccaatacgaataatcaaaaacgaacaagatgtaattagctttaaaccaccaa 10003702  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccg 225  Q
     | ||||| |||||||| |||||||| ||||| |||||  || || |||||||||| || ||||| ||||||||||||||||| |||||| |||||||||    
T  10003703 tatgtttgaagtttgactctttcaagtagaacctccaagagagcactttggttttggaatatccttctgttgcgatctttccaaatagtatataagaccg 10003802  T
Q  226 aaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    |||||||||| |||| ||| ||||||| |||||||||||||||||| || | ||| ||||||||||| ||||| |||||||||||||||||||||||    
T  10003803 aaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaaactgattagcatgagaatataaattgccattgagaac 10003899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 50 - 322
Target Start/End: Original strand, 27029648 - 27029920
Alignment:
Q  50 taaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttca 149  Q
    ||||||||||||||| ||  ||||| |||| ||||||| |||||||||||| ||||| |||||||||||||||||| | ||||| |||||||| ||||||    
T  27029648 taaacaaggtaaaggattaagtctcaaatacgaataatgaaaaacgaacaagatgtaattagctttcaaccaccaatatgtttgaagtttgactctttca 27029747  T
Q  150 agaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctt 249  Q
    || ||||| |||||| || || |||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||| ||||    
T  27029748 agtagaacctccaaaagagcactttggttttggaatatcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctt 27029847  T
Q  250 tcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccattgagaac 322  Q
    ||| |||||||||||||||||| || | ||| ||||||||||| ||||| |||||||||||||||||||||||    
T  27029848 tcatagaattctttgagaaaccacctaaagcgcaaaactgattagcatgagaatataaattgccattgagaac 27029920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 44753973 - 44753748
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||   ||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||    
T  44753973 aaaaacagactttacaaaacagtctgtaaacaaggtaaaggattaattctccaatacgaataatcaaaaacgaacaagatgtaattagctttcaaccacc 44753874  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagac 223  Q
    || | |||||||||||||| |||||||| ||||  |||||| |  || |||||||||| |||||||| |||||||| ||||||||||||||| |||||||    
T  44753873 aatatgtttggagtttgactctttcaagtagaaactccaaaagtgcactttggttttggaaaatccttctgttgcggtctttccatatagtatataagac 44753774  T
Q  224 cgaaatccaaataatagaaaatgctt 249  Q
    ||||||||||||||||| ||| ||||    
T  44753773 cgaaatccaaataatagtaaaagctt 44753748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 48759968 - 48759777
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    ||||||||||||||| | ||| | ||||||||||||| | ||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48759968 aaacagactttacaacacagtctgtaaacaaggtaaatgattaattctccaataagaataataaaaaacgaacaagatgtagttagctttcaaccaccaa 48759869  T
Q  126 aacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaa 217  Q
    |||||||| |||||||| |||||||| | ||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  48759868 aacgtttgaagtttgactctttcaagtaaaacctccaaaagaacaatttggttttggaaaatcttcctgttgcgatctttccatatattaaa 48759777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 25 - 302
Target Start/End: Original strand, 5556938 - 5557215
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    ||||||||| |||||  | ||| | ||||||| |||| || |||||||||||| | | ||| | |||| |||||   ||| |||| ||||||||||||||    
T  5556938 aaaacagacattacattacagtctgtaaacaatgtaacggattttgtctccaaaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccacca 5557037  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
      | ||||| ||||| |||||||||| |||| |||| | |||| ||||||||| |||||||||||||||||||||||||||||| | |  ||||||||||    
T  5557038 gtaagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttggtattgaaaaatcctcctgttgcgatctttccaaacaacaaataagacc 5557137  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaa 302  Q
    |||||||| ||||||| ||| | | || ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5557138 gaaatccatataatagtaaaagttatccaagaattctttgagaaagctccaagagcacaaaactgattagcatgtgaa 5557215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 66 - 311
Target Start/End: Original strand, 49369479 - 49369724
Alignment:
Q  66 ttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaat 165  Q
    |||||||||||| | | ||||| ||||   |||| |||| |||| ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| | ||    
T  49369479 ttttgtctccaaaagggataatcaaaagtaaacataatgaagtttgctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagat 49369578  T
Q  166 gaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttga 265  Q
    || | |  |||||||| |||||| || | |||| ||||||||| |||  |||||| | |||||||||||||||||| || ||||||  | ||||||||||    
T  49369579 gacccaaatggttttggaaaatcttcatattgcaatctttccaaataacaaataaaatcgaaatccaaataatagacaaagctttcgtataattctttga 49369678  T
Q  266 gaaacctccaagagcacaaaactgatttgcatgtgaatataaattg 311  Q
     ||||||||||| ||| ||||||| || ||||| | ||||||||||    
T  49369679 aaaacctccaagggcataaaactggttagcatgagtatataaattg 49369724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 37666028 - 37666239
Alignment:
Q  29 cagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaaaac 128  Q
    ||||| |||||||  ||| | ||||||| ||||||| ||||  |||||||| | ||| | |||| |||||| |||||| || | |||||||||||||||     
T  37666028 cagacattacaaagcagtctgtaaacaaagtaaaggatttttcctccaatagggatagtcaaaatcgaacataatgtaattcgttttcaaccaccaaaat 37666127  T
Q  129 gtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaa 228  Q
    ||||||||||||||||||||||| ||| |||| | |||| ||| ||| |  |||||||| |||||||| | ||||||||| ||  | ||||| |||||||    
T  37666128 gtttggagtttgaccctttcaagtagagcttcaagatgatcaaattgatgctgaaaaattctcctgtttctatctttccaaatgatgaataaaaccgaaa 37666227  T
Q  229 tccaaataatag 240  Q
    ||||||||||||    
T  37666228 tccaaataatag 37666239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 315
Target Start/End: Original strand, 45757435 - 45757644
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| ||||||||||||||||| ||||| || || ||||||||||||||| | |  | |||| || | || ||||| |||||  ||||||||| ||||||    
T  45757435 agtttgctttcaaccaccaaaatgtttgaagcttaaccctttcaagaagagcatttagatgatcactgtgattttggaaaattttcctgttgcaatcttt 45757534  T
Q  206 ccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatat 305  Q
    |||||||  |||||||||  || |||| ||||||| ||| | | ||  ||||||||||||||| |||||||  ||||||||||||||  |||||  || |    
T  45757535 ccatataacaaataagacaaaagtccagataatagtaaaaggtgtcctagaattctttgagaagcctccaaaggcacaaaactgattaacatgtatatgt 45757634  T
Q  306 aaattgccat 315  Q
    ||||||||||    
T  45757635 aaattgccat 45757644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 307
Target Start/End: Original strand, 40392461 - 40392658
Alignment:
Q  102 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgat 201  Q
    |||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||  ||   |  ||| ||| |||||| | |||||| ||  |||| || |    
T  40392461 atgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaagaagtcctgtaagttgatcaaattggttatcaaaaattctattgttacggt 40392560  T
Q  202 ctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtga 301  Q
    |||||||||||  |||||||  ||||||||||||||||||   | |||     |||||||||||||| ||||||||||||||||||||||||| ||| |     
T  40392561 ctttccatataacaaataaggtcgaaatccaaataataga---tcctt-----gaattctttgagaaccctccaagagcacaaaactgatttgaatgagc 40392652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 32152500 - 32152387
Alignment:
Q  26 aaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccaccaa 125  Q
    |||||||| |||||||  ||| | ||||||| ||||||| ||||  |||||||||| ||| | |||| ||||||  ||||| || |||||||||||||||    
T  32152500 aaacagacattacaaagcagtctgtaaacaaagtaaaggatttttcctccaataaggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaa 32152401  T
Q  126 aacgtttggagttt 139  Q
    ||||||| ||||||    
T  32152400 aacgtttagagttt 32152387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 26995826 - 26995934
Alignment:
Q  216 aataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||||||||||||||||| ||| |||| | ||   ||||| |||||||| |||||||||| |||||||||||||| ||| | |||||| | |||||    
T  26995826 aataagaccgaaatccaaataacagagaatgttgtccttgaattttttgagaaccctccaagagtacaaaactgatttgaatgagcatataagtcgccat 26995925  T
Q  316 tgagaactg 324  Q
      |||||||    
T  26995926 gaagaactg 26995934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 26995712 - 26995765
Alignment:
Q  101 aatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaag 154  Q
    ||||||||| ||||||||||||||| | ||||||||||| ||| | ||||||||    
T  26995712 aatgtagttcgctttcaaccaccaatatgtttggagtttaaccttctcaagaag 26995765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 73969 - 74259
Alignment:
Q  25 aaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacca 124  Q
    |||||||||||||||| | ||| | |||||||  ||| || |||||||||||| | | ||| | |||| |||||   |||||||||||||||||||||||    
T  73969 aaaacagactttacaagacagtctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaacgtgatgtagttagctttcaaccacca 74068  T
Q  125 aaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagacc 224  Q
    ||||||||| ||||| ||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  74069 aaacgtttgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctgttgcgatctttccatatagtaaataagacc 74168  T
Q  225 gaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccat 315  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||  |||  ||||| |||||||||||  |||||| ||||||||||||||    
T  74169 gaaatccaaataatagtaaaagctttcatagaattctttgagaagtctcttagagcgcaaaactgattatcatgtgtatataaattgccat 74259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 58948 - 58661
Alignment:
Q  24 aaaaacagactttacaaaatagtatttaaacaaggtaaagggttttgtctccaataagaataataaaaaacgaacaaaatgtagttagctttcaaccacc 123  Q
    |||||||||| |||||| | ||| | |||||||  ||| || |||||||||||| | | ||| | |||| ||||    ||| |||| |||||||||||||    
T  58948 aaaaacagacattacaagacagtctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaaagtgatgaagtttgctttcaaccacc 58849  T
Q  124 aaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatctttccatatagtaaataagac 223  Q
    || | ||||| ||||| ||||||||||||||| |||| | |||| | || |||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  58848 aatatgtttgaagtttaaccctttcaagaagagcttcaagatgatccatatggttttggaaaatcctcctgttgcgatctttccatataacaaataagac 58749  T
Q  224 cgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattg 311  Q
    ||||||||||||||||| ||| ||| ||| ||  ||||||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  58748 cgaaatccaaataatagtaaaagctatcatagcgttctttgagaaacctccaagagcacaaaactgattagcatgtgtatttaaattg 58661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 225194 - 225060
Alignment:
Q  106 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgcgatcttt 205  Q
    |||| |||||||| |||||| ||||||| ||||| ||| |||| | |||| |||| | ||||||||  || |||||||| || ||||| |||||||||||    
T  225194 agtttgctttcaatcaccaatacgtttgaagtttaaccttttccaaaagagcttcaagatgaacaacctgcttttgaaatattctcctattgcgatcttt 225095  T
Q  206 ccatatagtaaataagaccgaaatccaaataatag 240  Q
    |||||||  |||||| |||||||||||||| ||||    
T  225094 ccatataacaaataaaaccgaaatccaaatgatag 225060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 10928 - 11035
Alignment:
Q  217 ataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaattgccatt 316  Q
    ||||||||||||||||||||||||| || | | |    ||||| ||||| |||||||||||||||||||| ||||||| |||   |||||||| |||||     
T  10928 ataagaccgaaatccaaataatagagaaagttgtacttgaattttttgataaacctccaagagcacaaaattgatttgaatgattatataaatcgccatg 11027  T
Q  317 gagaactg 324  Q
     |||||||    
T  11028 aagaactg 11035  T

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