View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_high_20 (Length: 275)
Name: NF6166_high_20
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 45 - 258
Target Start/End: Complemental strand, 5172674 - 5172461
Alignment:
| Q |
45 |
ttgaatataatttttaaaagataaatttggtgcgaatgcggtcaacgtaacatatgcttcttccctgtcactccatggcttgtttgaatttaaaccattg |
144 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
5172674 |
ttgaaaataatttttaaaagataaatttggtgcgaatgcggtcaacgtaacatatgcttcttccctgtaactccatggcttgtttgaatttaaatcattg |
5172575 |
T |
|
| Q |
145 |
ttcccataacgacaaaattctttgctaacgacaaaattatataaatttccatgttctttccttgttattattacatttatttatataaattttctattta |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172574 |
ttcccataacgacaaaattctttgctaacgacaaaattatataaatttccatgttctttccttgttattattacatttatttatataaattttctattta |
5172475 |
T |
|
| Q |
245 |
tcatttgtgcttgt |
258 |
Q |
| |
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|||||||||||||| |
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| T |
5172474 |
tcatttgtgcttgt |
5172461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 45 - 258
Target Start/End: Complemental strand, 5271939 - 5271733
Alignment:
| Q |
45 |
ttgaatataatttttaaaagataaatttggtgcgaatgcggtcaacgtaacatatgcttcttccctgtcactccatggcttgtttgaatttaaaccattg |
144 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
5271939 |
ttgaaaataatttttaaaagataaatttggtgcgaatgcggtcaacgtaacatatgcttcttccccgtcactccatggcttgtttgaatttaaatcattg |
5271840 |
T |
|
| Q |
145 |
ttcccataacgacaaaattctttgctaacgacaaaattatataaatttccatgttctttccttgttattattacatttatttatataaattttctattta |
244 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5271839 |
ttcccataacgacaaaattctttgctagcgacaa------ataaatttccatg-tctttccttgttattattacatttatttatataaattttctattta |
5271747 |
T |
|
| Q |
245 |
tcatttgtgcttgt |
258 |
Q |
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|||||||||||||| |
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| T |
5271746 |
tcatttgtgcttgt |
5271733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 5166585 - 5166667
Alignment:
| Q |
81 |
tgcggtcaacgtaacatatgcttcttccctgtcactccatggcttgtttgaatttaaaccattgttcccataacgacaaaatt |
163 |
Q |
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|||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||| |||| || |||||||||||||||| |
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| T |
5166585 |
tgcggtcaacgtaacatatgtttcttccttgtcacttcatggcttgttttgatttaaatcattctttccataacgacaaaatt |
5166667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5172774 - 5172725
Alignment:
| Q |
1 |
ctctcattccctcccctccgttaaaatctctcccctcctaattcttgaat |
50 |
Q |
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| T |
5172774 |
ctctcattccctcccctccgttaaaatccctcccctcctaattcttgaat |
5172725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 5166794 - 5166846
Alignment:
| Q |
184 |
tataaatttccatgttctttccttgttattattacatttatttatataaattttctat |
241 |
Q |
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||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |
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| T |
5166794 |
tataaatttccatgttccttccttg---ttattacatttatt--tataaattttctat |
5166846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 5272035 - 5271995
Alignment:
| Q |
5 |
cattccctcccctccgttaaaatctctcccctcctaattct |
45 |
Q |
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|||||| |||||||||||||||| |||||||||||||||| |
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| T |
5272035 |
cattccatcccctccgttaaaattcctcccctcctaattct |
5271995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25104551 - 25104507
Alignment:
| Q |
1 |
ctctcattccctcccctccgttaaaatctctcccctcctaattct |
45 |
Q |
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||||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
25104551 |
ctctccttccctcccctccgttgaaatccctcccctcctaattct |
25104507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25163644 - 25163600
Alignment:
| Q |
1 |
ctctcattccctcccctccgttaaaatctctcccctcctaattct |
45 |
Q |
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||||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
25163644 |
ctctccttccctcccctccgttgaaatccctcccctcctaattct |
25163600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 7015907 - 7015936
Alignment:
| Q |
9 |
ccctcccctccgttaaaatctctcccctcc |
38 |
Q |
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| T |
7015907 |
ccctcccctccgttaaaatctctcccctcc |
7015936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 33113365 - 33113393
Alignment:
| Q |
8 |
tccctcccctccgttaaaatctctcccct |
36 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33113365 |
tccctcccctccgttaaaatctctcccct |
33113393 |
T |
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