View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6166_high_26 (Length: 230)

Name: NF6166_high_26
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6166_high_26
NF6166_high_26
[»] chr1 (2 HSPs)
chr1 (1-212)||(1718073-1718284)
chr1 (46-92)||(38483819-38483865)
[»] chr3 (12 HSPs)
chr3 (1-99)||(26647857-26647955)
chr3 (1-96)||(26654001-26654096)
chr3 (25-99)||(20033501-20033575)
chr3 (22-98)||(19951998-19952074)
chr3 (1-92)||(20015375-20015466)
chr3 (22-91)||(20007447-20007516)
chr3 (23-77)||(19849871-19849925)
chr3 (41-99)||(20006421-20006479)
chr3 (22-99)||(20035770-20035847)
chr3 (22-91)||(19813157-19813226)
chr3 (35-99)||(19956971-19957035)
chr3 (101-140)||(26648113-26648152)
[»] chr5 (3 HSPs)
chr5 (15-99)||(26354094-26354178)
chr5 (22-92)||(9815908-9815978)
chr5 (41-91)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (25-99)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (23-87)||(12582137-12582201)
chr7 (23-87)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (51-90)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (51-90)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1718073 - 1718284
Alignment:
Q  1 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactcttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718073 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactcttag 1718172  T
Q  101 gtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttataaaaagatattaccactgaagaggtca 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1718173 gtacaagtgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttatgaaaagatattaccactgaagaggtca 1718272  T
Q  201 atttcaaaagat 212  Q
    ||||||||||||    
T  1718273 atttcaaaagat 1718284  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 38483819 - 38483865
Alignment:
Q  46 gtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 92  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||    
T  38483819 gtaatgatgttggtgttccacctgaatttcctccagatcttgttgac 38483865  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26647857 - 26647955
Alignment:
Q  1 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    |||||| ||||| ||||| |  ||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  26647857 gttcaaggaaacatagagtttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttcctcccaatcttgttgacactctta 26647955  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 26654001 - 26654096
Alignment:
Q  1 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactc 96  Q
    |||||| ||||||||||||| ||||||| ||||||| ||||||||||   ||| || |||||||||||||||||||||||||||||||||||||||    
T  26654001 gttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttcctcccaatcttgttgacactc 26654096  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 20033575 - 20033501
Alignment:
Q  25 taggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    ||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  20033575 taggaaatgctaacgaaagtagtaatgatgatggtgttgcacctggatttcctcccaatcttgttgacactctta 20033501  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 19951998 - 19952074
Alignment:
Q  22 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctt 98  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||  |||||| ||||||    
T  19951998 atgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttcctaccaattgtgttgaaactctt 19952074  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 20015466 - 20015375
Alignment:
Q  1 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 92  Q
    |||||| ||||| |||| || || |||||||| |||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||    
T  20015466 gttcaaggaaacatagacctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggattttgtcccaatcttgttgac 20015375  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 20007516 - 20007447
Alignment:
Q  22 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 91  Q
    |||||||| || |||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  20007516 atgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgttga 20007447  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 19849871 - 19849925
Alignment:
Q  23 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcct 77  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  19849871 tgtaggaaaagctaacagaagtggtaatgatgttggttttccacttggatttcct 19849925  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 20006479 - 20006421
Alignment:
Q  41 aagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  20006479 aagtggtattgatgttggtgttccagatggatttcctcccaatcttgttggcactctta 20006421  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 20035847 - 20035770
Alignment:
Q  22 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    |||||||||||   ||||||||||||| ||| ||| ||||||  ||||||||| |||||||||||||||| |||||||    
T  20035847 atgtaggaaaattaaacaaaagtggtattgaagtttgtgttcagcctggattttctcccaatcttgttgatactctta 20035770  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 19813157 - 19813226
Alignment:
Q  22 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 91  Q
    |||||||||||  | ||| |||||||| || || || ||||||||||| |||||||||||||||||||||    
T  19813157 atgtaggaaaatttgacagaagtggtattggtgctgctgttccacctgaatttcctcccaatcttgttga 19813226  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 19956971 - 19957035
Alignment:
Q  35 taacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    ||||| ||||||||  || ||| |||||| |||||||||| |||||||||||||||| |||||||    
T  19956971 taacagaagtggtatggaggtttgtgttcaacctggattttctcccaatcttgttgatactctta 19957035  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 26648113 - 26648152
Alignment:
Q  101 gtacaaatgtggtggcataatccatgaatctaagcattta 140  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  26648113 gtacaagtgtggtggcaaaatccatgaatctaagcattta 26648152  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 26354178 - 26354094
Alignment:
Q  15 agagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    |||||| |||| |||||| |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26354178 agagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttgacattctta 26354094  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 9815908 - 9815978
Alignment:
Q  22 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 92  Q
    |||||||||||  | ||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  9815908 atgtaggaaaaattgacagaagttgtaatgatgttggttttccacctgaatttcctcccaatcttgttgac 9815978  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 27472660 - 27472710
Alignment:
Q  41 aagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 91  Q
    |||||||||||||||||||||||||| |||||| |||  |||| |||||||    
T  27472660 aagtggtaatgatgttggtgttccacttggattccctttcaatgttgttga 27472710  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 22685581 - 22685507
Alignment:
Q  25 taggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 99  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||| |||| ||||    
T  22685581 taggaatagctaacagaagtggtaatgatgttggtgttccacctggattttctttcaatcttgttaacacactta 22685507  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 12582137 - 12582201
Alignment:
Q  23 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttg 87  Q
    ||||||||||||||||||||| |||| | ||||||||| ||  ||| |||||| |||||||||||    
T  12582137 tgtaggaaaagctaacaaaagcggtattcatgttggtggtcagcctagatttcgtcccaatcttg 12582201  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 12521888 - 12521952
Alignment:
Q  23 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttg 87  Q
    ||||||||||||||||||||| |||| | ||||||||| ||  ||| |||||| || ||||||||    
T  12521888 tgtaggaaaagctaacaaaagcggtattcatgttggtggtcagcctagatttcgtctcaatcttg 12521952  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 19601 - 19562
Alignment:
Q  51 gatgttggtgttccacctggatttcctcccaatcttgttg 90  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  19601 gatgttggtgttctacctggatttcctcccattcttgttg 19562  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 28219103 - 28219064
Alignment:
Q  51 gatgttggtgttccacctggatttcctcccaatcttgttg 90  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  28219103 gatgttggtgttctacctggatttcctcccattcttgttg 28219064  T

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