View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_high_4 (Length: 508)
Name: NF6166_high_4
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 160 - 495
Target Start/End: Original strand, 3218793 - 3219121
Alignment:
| Q |
160 |
gaataggtcattacatatttgttatatggtatcagattactgaactatctcttctttcaatcatccgttcccactgccaccgtctacaagaacccttgtt |
259 |
Q |
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| T |
3218793 |
gaataggtcattacatatttgttatatggtatcagattactgaactatctcttctttcaatcattcgttcccactgccaccgtctacaagaacccttgtt |
3218892 |
T |
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| Q |
260 |
acctccattgttaaagagatttagactaaaagcaagaccaaaatgtactttgaagtttgaaaatgatgctatatagaggaatattgaaacaggaatggtg |
359 |
Q |
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| T |
3218893 |
acctccattgttaaagagatttagactaaaagcaagaccaaaatgtactttgaagtttgaaaatgatgctatatagaggaatattaaaacaggaatg--- |
3218989 |
T |
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| Q |
360 |
ttaagtgttaacacattgtttaatatattttgtaacgcgcgctttttattactagttactagataaaaatcatatcatcactatagtttaaaatgagatt |
459 |
Q |
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| T |
3218990 |
----gtgttaacacattgtttaatatattttgtaacgcgcgctttttattactagttactagataaaaatcatatcatcactatagtttaaaatgagatt |
3219085 |
T |
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| Q |
460 |
atcaatggaataattcaacttgtatatcagtataat |
495 |
Q |
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| T |
3219086 |
atcaatggaataattcaacttgtatatcagtataat |
3219121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 3218649 - 3218731
Alignment:
| Q |
17 |
agttttgactatattaggaacaaa-tgataatttaatacataaactaatagttaattttttctttaaaaaaggaccaaagaag |
98 |
Q |
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| T |
3218649 |
agttttgactatattaggaacaaaatgataatttaatacataaactaatagttaattttttctttaaaaaaggaccgaagaag |
3218731 |
T |
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