View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6166_high_8 (Length: 440)
Name: NF6166_high_8
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 24 - 424
Target Start/End: Complemental strand, 37068525 - 37068124
Alignment:
| Q |
24 |
caaactactacccaagctatt-actaactatttaaggatagtggttattagaagaataccccacgttccttatattatatacagtacaggcttgatcaaa |
122 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068525 |
caaactactacccaagctatttactaactatttaagggtagtggttattagaagaataccccacgttccttatattatatacagtacaggcttgatcaaa |
37068426 |
T |
|
| Q |
123 |
cctcgattattaattttattaaagcaaattttgtttctccaaatctccattgtgaaaatatggaggaagccaagaaactcaaaacattggcatgctatga |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
37068425 |
cctcgattattaattctattaaagcaaattttgtttctccaaatctccattgtgaaaatatggaggaagccaagaaactcaaaacagtgacatgctatga |
37068326 |
T |
|
| Q |
223 |
tgaagagtgtgaccagtttagcaatctctcagacgaattggtatgtcatgttctatcttttctcccaacaaaagcagcatacagatcaagtgttttatct |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068325 |
tgaagagtgtgaccagtttagcaatctctcagacgaattggtatgtcatgttctatcttttctcccaacaaaagcagcatacagatcaagtgttttatct |
37068226 |
T |
|
| Q |
323 |
aaaagatgggcatcgatctgtaccacaatccttgaccttaactttgaaataccagaagttacagattcgtccagtgaaattaaatccgtatatgcagctc |
422 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068225 |
aaaagatgggcatcgatctgcaccacaatccttgaccttaactttgaaataccagaagttacagattcgtccagtgaaattaaatccgtatatgcagctc |
37068126 |
T |
|
| Q |
423 |
tt |
424 |
Q |
| |
|
|| |
|
|
| T |
37068125 |
tt |
37068124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University