View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_high_9 (Length: 425)
Name: NF6166_high_9
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 21485286 - 21485113
Alignment:
| Q |
16 |
aaaatgttgtctagtaacctgcaagtttttcgtacacaattctatgaagtacatccttacaaaaataaaaataaat-tatgaagtacatattcttttttg |
114 |
Q |
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| T |
21485286 |
aaaatgttgtctagtaacctgcaagtttttcgtatacaattctatgaagtacatcctt-caaaaaaaataaaaaatctatgaagtgcatattcttttttg |
21485188 |
T |
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| Q |
115 |
gctaaaaacaagtactc-nnnnnnnnnnccaaaagaaacgaacccttgaattaatatatttgacttacatttatg |
188 |
Q |
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| T |
21485187 |
gctaaaaacaagtactctttttttttttccaaaagaaacgaacccttgaattaatatatttgacttacatttatg |
21485113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 21484498 - 21484365
Alignment:
| Q |
266 |
gttatgcctcacaacaaaaccatataannnnnnnnaaaagaataaaatcagagatcctaagcttaaagattcatatataaacatggataaatgaccaagt |
365 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
21484498 |
gttatgcctcacaacaaaaccatagaattttttttaaaagaataaaatcatagattctaagcttaaaaattcatatataaacatggatgaatgaccaagt |
21484399 |
T |
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| Q |
366 |
caacattaagataagatacacaatcaaatcaaat |
399 |
Q |
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| T |
21484398 |
caacattaagataaaatacacaatcaaatcaaat |
21484365 |
T |
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