View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_1 (Length: 785)
Name: NF6166_low_1
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 15 - 771
Target Start/End: Original strand, 34816242 - 34816992
Alignment:
| Q |
15 |
atcaaattgcgatcgttgaggatatatatgttagtctcagtggtagagtcgttcacatcaattctattttgggttctatcccaatatcattaatgagagt |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34816242 |
atcaaattgcgatcgttgaggatacatatgttagtctcagtggtagagttgttcacatcaattctattttgggttctatcccaacatcattaatgagagt |
34816341 |
T |
|
| Q |
115 |
actactgcaagggtgattctcattgcaaaaggtgccttatatgccaagtacaaagttagtattgtggctaactcggatttatctaattttgacagattga |
214 |
Q |
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||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816342 |
actgctgcaagggtgattctcattgcaaaaggtgccgtat--gccaagtacaaagttggtattgtggctaactcggatttatctaattttgacagattga |
34816439 |
T |
|
| Q |
215 |
gtctagcttcattgtggtggaaggacttgtgtggtgtgggtaatgggggtcgggggagaggattggttcaagggtatgatgcggaaaaaatgggaaatgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816440 |
gtctagcttcattgtggtggaaggacttgtgtggtgtgggtaatgggggttgggggagaggattggttcaagggtatgatgcggaaaaaatgggaaatgg |
34816539 |
T |
|
| Q |
315 |
tgggagtacatattcttttctggcatgataagtgggtcagcgagtatcctctccgagaagtcttccctagattcttttcggtttaacaatgactagagtg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816540 |
tgggagtacatattcttttctggcatgataagtgggtcagcgagtatcctctccgagaagtcttccctagattcttttcggtttaacaatgactagagtg |
34816639 |
T |
|
| Q |
415 |
tgtcatttcagacatggggcagggtgggaaccggtaaagagttgggtcatgaattttggatgattttttcacatgtttccaaggaatgaataccttgata |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34816640 |
tgtcatttcagacatggggcagggtgggaaccggtaaagagttgggtcatgaattttggatgattttttcacatgtttccaaggaatgaa----ttgata |
34816735 |
T |
|
| Q |
515 |
ctctagagctggaagatcttgaaaatggcgaagctcgtatgcttcaaggtatgagttcgattcttcttatgatgtttgacaactgtgagttccttatgca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816736 |
ctctagagctggaagatcttgaaaatggcgaagctcgtatgcttcaaggtatgagttcgattcttcttatgatgtttgacaactgtgagttccttatgca |
34816835 |
T |
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| Q |
615 |
atatgcgaggtatgttcttgaacttaggagaaatttgttatcaattagcatgcttgttgggttaagccatgtcactagtttcgaacatgggttaatgaaa |
714 |
Q |
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| T |
34816836 |
atatgcgacgtatgtttttgaacttaggagaaatttgttatcaattagcatgcttgttgggttaagccatgtcactagtttcgaacatgggttaatgaaa |
34816935 |
T |
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| Q |
715 |
atttcgcatgatacgaagataaatgcaccaaagtgtgtggttaatacatgttaaatg |
771 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34816936 |
attttgcatgatacgaagataaatgcaccacagtgtgtggttaatacatgttaaatg |
34816992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 659
Target Start/End: Complemental strand, 2239256 - 2239177
Alignment:
| Q |
580 |
cttatgatgtttgacaactgtgagttccttatgcaatatgcgaggtatgttcttgaacttaggagaaatttgttatcaat |
659 |
Q |
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|||||||||| | |||| ||||| ||||| ||||| ||| ||||| |||||||||||||||| | ||||| |||||||| |
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| T |
2239256 |
cttatgatgtataacaattgtgaattcctattgcaagatgtgaggtgtgttcttgaacttaggtggaatttattatcaat |
2239177 |
T |
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