View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_11 (Length: 419)
Name: NF6166_low_11
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 2993396 - 2993794
Alignment:
| Q |
13 |
aatatgatagaataaagagttagataaacgtatataatatgataactatttatctagtaaagtatcaaatacattactatactgtgtaggatatttgcga |
112 |
Q |
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| T |
2993396 |
aatatgatagaataaagagttagataaacgtatataatatgataactatttatctagtaaagtatcaaatacattactatactgtgtaggatatttgcga |
2993495 |
T |
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| Q |
113 |
aaatggtcttcgtatgtatgattttcacatacgaaagtaaagtgtgctatctcatgcaccattt-aaaaagggagagaaacacatgaaaatctagatgtt |
211 |
Q |
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| T |
2993496 |
gaatgatcttcgtatgtatgattttcacatacgaaagtaaagtgtgctatctcatgcaccatttaaaaaagggagagaagcacatgaaaatctagatgtt |
2993595 |
T |
|
| Q |
212 |
gcgagtttaaatggtgagaaatcacaatttactttctcatatcaaaatcaagctagagggaaacaatttccgac--tatatatataacataactttatac |
309 |
Q |
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| T |
2993596 |
gcgagtttaaatggtgagaaatcacaatttactttctcatatgaaaatcaagccagagggaaacaatttccgactatatatatataacataactttatac |
2993695 |
T |
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| Q |
310 |
atgtatgaattttaataaatatagagaaaccagctaaattagatgcgaccacccnnnnnnngactatatgatcaacctcattgatgtgttttctgatga |
408 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
2993696 |
atgtatgaattttagtaaatatagagaaactagctaaattagatgcgaccacccaaaaaaagactatatgatcaacctcattgatgtgtcttctaatga |
2993794 |
T |
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