View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_12 (Length: 402)
Name: NF6166_low_12
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 1330628 - 1330912
Alignment:
| Q |
19 |
tgtcctgtatacacctaaaaagataataaaagttcttttatgaaaatagagaatgatgttgacgacctaatcttactatgttatgcagatataattaact |
118 |
Q |
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| T |
1330628 |
tgtcctgtatacacctaaaaagataataaaagttcttttatgaaaatagagaatgatgttgacgacctaatcttactatgttatgcagatataatgaact |
1330727 |
T |
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| Q |
119 |
aaaacggaaatattagccatcaagtttggtgttcatagtcagtttgtgatcaatttagactgcgtacttgctttgattttaggtgccatgtctcttgaaa |
218 |
Q |
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| T |
1330728 |
aaaacggaaatattagccatcaagtttggtgttcatagtcagtttgtgatcaatttagactgcgtacttgctttgattttaggtgccatgtctcttgcaa |
1330827 |
T |
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| Q |
219 |
ttgtgtaacgtagattgaagggtcctcaaagagagttacataatcaacatcctctgaagttataacttaatattaatagatagat |
303 |
Q |
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| T |
1330828 |
ttgtgtaacgtagattgaagggtcctcaaagagagttacataatcaacatcctcttaagttataacttaatattaatagatagat |
1330912 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 1330985 - 1331079
Alignment:
| Q |
298 |
atagatagatcatgtttagtctaaatgctttttattaatagtaagagttttgtctagtgatnnnnnnnttaaaccttgcatccgaatgtcctatg |
392 |
Q |
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| T |
1330985 |
atagatagatcgtgtttagtctaaatgctttttattaatagtaagagttttgtctagtgaaaaaaaaaataaacattgcatccgaatgtcctatg |
1331079 |
T |
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