View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6166_low_13 (Length: 394)
Name: NF6166_low_13
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 197 - 385
Target Start/End: Complemental strand, 37263894 - 37263706
Alignment:
| Q |
197 |
gaccgtaaccgaaattatgtaatttatgtcatgacgtatgcattaaatattggaggtgcacgttaagaaatattttattaatgatgatgaaccaatgttt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37263894 |
gaccgtaaccgaaattatgtaatttatgtcatgacgtatgcattaaatattggaggtgcacgttaagaaatattttattaatgatgatgaaccaatgttt |
37263795 |
T |
|
| Q |
297 |
aatggccagataaaactgattacatcctttttgggatcaatgtaatcaggaaattatgagccaatatttggtcaacctataagaataat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37263794 |
aatggccagataaaactgattacatcctttttgggatcaatgtaatcaggaaattatgagccaatatttggtcaacctataagaataat |
37263706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 37264075 - 37263977
Alignment:
| Q |
17 |
atatttgagggtttctctcaaatgtatatatggaggcaaactttttcaaagtctactcttgacatggtgcactatgaactaaactcaacattgtcatgc |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37264075 |
atatttgagggtttctctcaaatatatatatggaggaaaactttttcaaagtctactcttgacatggtgcactatgaactaaactcaacattgtcatgc |
37263977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University