View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_19 (Length: 319)
Name: NF6166_low_19
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 43530373 - 43530086
Alignment:
| Q |
16 |
atgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgccttt |
115 |
Q |
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| T |
43530373 |
atgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgccttt |
43530274 |
T |
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| Q |
116 |
ggtcccatcccaaaactttctcaggtttatcaaaaacccacttgtttaaacttccattaggcatataatcataaaccaacatcaattcattgccctttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43530273 |
ggtcccatcccaaaactttctcaggtttatcaaaaacccacttgtttaaacttccattaggcatataatcataaaccaacatcaattcattgccctttct |
43530174 |
T |
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| Q |
216 |
acaccatcccctcatttgtactaaattcttatgttgaagcctccccatacttgaaatctcagccataaattctcttaacccttgttta |
303 |
Q |
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| T |
43530173 |
acaccatcccctcatttgtactaaattcttatgttgaagcctccccatacttgaaatctcagccataaattctcttaacccttgttta |
43530086 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 10191522 - 10191489
Alignment:
| Q |
161 |
ttaaacttccattaggcatataatcataaaccaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10191522 |
ttaaacttccattaggcatataatcataaaccaa |
10191489 |
T |
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