View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6166_low_20 (Length: 302)
Name: NF6166_low_20
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 27775339 - 27775060
Alignment:
| Q |
1 |
caaatgttatttcagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775339 |
caaatgttattccagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgt |
27775240 |
T |
|
| Q |
101 |
gatggatatagatgcaattaattctaaaataacaaactaaactttcaagacaaaacataaaaggtgggagacaatacatgtttaagctgcagaagaattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775239 |
gatggatatagatgcaattaattctaaaataacaaactaaactttaaagacaaaacataaaaggtgggagacaatacatgtttaagctgcagaagaattg |
27775140 |
T |
|
| Q |
201 |
ctgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagtt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775139 |
ttgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagtt |
27775060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 27764453 - 27764322
Alignment:
| Q |
21 |
gagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgtgatggatatagatgcaatta |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || ||||||||| | |
|
|
| T |
27764453 |
gagctcaacggaataggctaaaagattatttcagcatcttgattatttagatgttaagtaagattagagatattaatagtgatgaattgagatgcaatca |
27764354 |
T |
|
| Q |
121 |
attctaaaataacaaactaaactttcaagaca |
152 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |
|
|
| T |
27764353 |
attctaaaataccaaaccaaactttcaagaca |
27764322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 27799814 - 27799689
Alignment:
| Q |
40 |
aaaagattatttcagcatcttgattatttagatgt-----taagtatgattagagataataattgtgatggatatagatgcaattaattctaaaataaca |
134 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||| | ||| || |||||||||||||||||||||| || |
|
|
| T |
27799814 |
aaaagattagtttagcatcttgattatttagatggagtaattagtatgattagagatgataacagagatagactaagatgcaattaattctaaaatacca |
27799715 |
T |
|
| Q |
135 |
aactaaactttcaagacaaaacataa |
160 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
27799714 |
aactaaactttcaagagaaaacataa |
27799689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University