View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_21 (Length: 293)
Name: NF6166_low_21
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 29118808 - 29118540
Alignment:
| Q |
15 |
cacatatatcttgttattttaagttttaacttcatttgtctcttccatttcagttagacattcttctatatttatatgcaataatcatatcaaatccatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29118808 |
cacatatatcttgttattttaagttttaacttcatttgtctcttccatttcagttagacattcttctatatttatatgcaataatcatatcaaatccatt |
29118709 |
T |
|
| Q |
115 |
tatcctttcctaaaccaaaaccaataggaacgtacatatatgattcaaattactaaaggcactacaatataattgagatctagtaacacttaaaattgtt |
214 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29118708 |
tatcctttcctaaaccaaaaccaatgggaacgtacatatatga-tccaattactaaaggcactacaatataattgagatctagtaacacttaaaattgtt |
29118610 |
T |
|
| Q |
215 |
gctaaaccaagaagaatgttactaaacacactgttacaaaagagttttaagtcacactttacagtattatct |
286 |
Q |
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| T |
29118609 |
gctaaaccaagaagaatgttactaaacacgct-atacaaaagag-tttaagtcacactttacagtattatct |
29118540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 26619223 - 26619160
Alignment:
| Q |
174 |
cactacaatataattgagatctagtaacacttaaaattgttgctaaaccaagaagaatgttact |
237 |
Q |
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| T |
26619223 |
cactacaacataattgacatctagtaacacttgaaattgttactaaatcaagaaaaatgttact |
26619160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 30089716 - 30089778
Alignment:
| Q |
176 |
ctacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact |
237 |
Q |
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|||||| |||||||| |||||||||||||| |||| |||| ||||| |||||| ||||||||| |
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| T |
30089716 |
ctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttact |
30089778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 31571008 - 31571072
Alignment:
| Q |
174 |
cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact |
237 |
Q |
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|||||||| |||||||| |||||||||||||| ||||||||| |||| |||||| ||||||||| |
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| T |
31571008 |
cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttact |
31571072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 30786246 - 30786310
Alignment:
| Q |
174 |
cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact |
237 |
Q |
| |
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|||||||| |||||| |||||||||||||||| |||||||| || || |||||| ||||||||| |
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| T |
30786246 |
cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttact |
30786310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 28636882 - 28636948
Alignment:
| Q |
174 |
cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttactaa |
239 |
Q |
| |
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|||||||| |||||| ||||||||||||| || |||||||| ||||| |||||| ||||||||||| |
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|
| T |
28636882 |
cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaa |
28636948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 23904474 - 23904406
Alignment:
| Q |
173 |
gcactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttactaaa |
240 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||| | ||||| ||||| || ||||||||| |
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| T |
23904474 |
gcacaacaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaa |
23904406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 4923754 - 4923690
Alignment:
| Q |
174 |
cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact |
237 |
Q |
| |
|
|||||||| |||||| | ||| |||||||||| ||||||||| ||||| |||||| ||||||||| |
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|
| T |
4923754 |
cactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact |
4923690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 27151347 - 27151287
Alignment:
| Q |
179 |
caatataattgagatctagtaacacttaaaattgttgctaaaccaagaagaatgttactaa |
239 |
Q |
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|||||||||||| ||||||||| | || |||||||| ||||| |||||| ||||| ||||| |
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| T |
27151347 |
caatataattgacatctagtaataatttaaattgttactaaatcaagaaaaatgtcactaa |
27151287 |
T |
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