View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_23 (Length: 257)
Name: NF6166_low_23
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 17779715 - 17779941
Alignment:
| Q |
13 |
aatatgccattacaaacatcacattaatcaattataaagatgaacacttaagccaacccaatgcaataagccattaacttatttgttacattcattacga |
112 |
Q |
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| T |
17779715 |
aatatgccattacaaacatcacattaatcaattataaagatgaacacttaagccaacccaatgcaataagccattaacttatttgttacattcattacga |
17779814 |
T |
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| Q |
113 |
cttatatagctatctttgccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17779815 |
cttatatagctatctttgccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatgtcctcatt |
17779914 |
T |
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| Q |
213 |
gatcttctcatattcaactgtccattt |
239 |
Q |
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| T |
17779915 |
gatcttctcatattcaactgtccattt |
17779941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 17800814 - 17800921
Alignment:
| Q |
132 |
cttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaact |
231 |
Q |
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|||| |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
17800814 |
cttgacaagatgagcatcaatatctctagtacatttgcataagtaatccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaaca |
17800913 |
T |
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| Q |
232 |
gtccattt |
239 |
Q |
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|||||||| |
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| T |
17800914 |
gtccattt |
17800921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 17691598 - 17691705
Alignment:
| Q |
132 |
cttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaact |
231 |
Q |
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|||| |||||||| |||||| ||||||| ||||||| || ||||||||| | | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17691598 |
cttgacaagatgagcatcaatgtctcgagtgcatttgctaaggtattccatccaactatttggaggttcaatatcctcattgatcttctcatattcaaca |
17691697 |
T |
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| Q |
232 |
gtccattt |
239 |
Q |
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|||||||| |
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| T |
17691698 |
gtccattt |
17691705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 17822156 - 17822230
Alignment:
| Q |
165 |
tttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaactgtccattt |
239 |
Q |
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| T |
17822156 |
tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccattt |
17822230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 17717320 - 17717374
Alignment:
| Q |
185 |
agccatttggagggtcaatatcctcattgatcttctcatattcaactgtccattt |
239 |
Q |
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| T |
17717320 |
agccatttggtgggtcaatatcctcattgatcttctgatattcaacagtccattt |
17717374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 17813245 - 17813355
Alignment:
| Q |
129 |
tgccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattca |
228 |
Q |
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||||||| |||||||| ||||||||||| || | ||| ||| ||| ||||| ||||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
17813245 |
tgccttgacaagatgagcatcaatatctctagtaagtttagcaacgtagtccatccagccattaggagcgtcaatatcctcattgatcttcacatattca |
17813344 |
T |
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| Q |
229 |
actgtccattt |
239 |
Q |
| |
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| |||||||| |
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| T |
17813345 |
atagtccattt |
17813355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 17800560 - 17800618
Alignment:
| Q |
30 |
atcacattaatcaattataaagatgaacacttaagccaacccaatgcaataagccatta |
88 |
Q |
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|||||||| || | |||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
17800560 |
atcacatttattatttataaagatgaacacttaagccaaccccatggattaagccatta |
17800618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 17788931 - 17788974
Alignment:
| Q |
13 |
aatatgccattacaaacatcacattaatcaattataaagatgaa |
56 |
Q |
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|||||||||||||||||||| ||||||| | ||||||||||||| |
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| T |
17788931 |
aatatgccattacaaacatcgcattaattacttataaagatgaa |
17788974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 17817436 - 17817534
Alignment:
| Q |
131 |
ccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaa |
229 |
Q |
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||||| |||||||| ||||||||||| || ||||||| || ||| ||||| ||||||| |||| |||||||||||||| |||||||||| |||| |
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| T |
17817436 |
ccttgacaagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataatcaa |
17817534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 17843300 - 17843393
Alignment:
| Q |
131 |
ccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcata |
224 |
Q |
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||||| |||||||| ||||||||||| || ||||||| || ||| ||||| ||||||| |||| |||||||||||||| |||||||||| |
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| T |
17843300 |
ccttgacaagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcata |
17843393 |
T |
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