View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_24 (Length: 251)
Name: NF6166_low_24
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 5173509 - 5173432
Alignment:
| Q |
9 |
gagatgaaattacatacagcagttccgttgaccaatgcagtcaacataacatatgttctttatttgtcacgtcatggc |
86 |
Q |
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| T |
5173509 |
gagatgaaattacatacagcagttccgttgaccaatgcagtcaacataacatatgttctttctttgtcaggtcatggc |
5173432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 5272488 - 5272434
Alignment:
| Q |
32 |
tccgttgaccaatgcagtcaacataacatatgttctttatttgtcacgtcatggc |
86 |
Q |
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| T |
5272488 |
tccgttgaccaatgcagtcaacatagcatatgttctttctttgtcacgtcatggc |
5272434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 34740712 - 34740676
Alignment:
| Q |
155 |
gttagatgtacaaatcactcctactactattttgttg |
191 |
Q |
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| T |
34740712 |
gttacatgtacaaaccactcctactactattttgttg |
34740676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 45326246 - 45326197
Alignment:
| Q |
155 |
gttagatgtacaaatcactcctactactattttgttgctgagtcaacggccg |
206 |
Q |
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| T |
45326246 |
gttacatgtacaaatcactcctactactacgttgttgct--gtcaacggccg |
45326197 |
T |
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