View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_3 (Length: 559)
Name: NF6166_low_3
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 29253108 - 29252612
Alignment:
| Q |
8 |
gaaccctgaacacactggttgcaagtatggttaattggaatgaatgaatgctcatgtggaaattatggatagaaaattgtcttttttattaagttgataa |
107 |
Q |
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| T |
29253108 |
gaaccctgaatacacgggttgcaagtatggttaatgggaatgaatgaatgttcatgtggaaattatgtataaaaaattgtcttttttattaagttgataa |
29253009 |
T |
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| Q |
108 |
aaacaaaatatggtcaaataaattagtgaagttccttgcgtaggtcctcctaaaaatatatcgtacagagttgtaaataaaattaagacatacatatttt |
207 |
Q |
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| T |
29253008 |
aaacaaaatatggtcaaataaatgagtgaagttccttgcgtaggtcctcctaaaaatatatcgtacagagttgtaaataaaattaagacatacatatttt |
29252909 |
T |
|
| Q |
208 |
aaagcactaatgatccattattacttctataatctcaatccatgtatccttcttgttactacttgcgattgctatgtgtttcagtaattcaacctttggc |
307 |
Q |
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| T |
29252908 |
aaagcactaatgatccaatattacttctataatttcaatccatgtatccttcttgttactacttgtgattgctatgtgtttcagtaattcaacctttggc |
29252809 |
T |
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| Q |
308 |
agtagacctagagcctctattccactaaactctcaatctcaatgcgaaaagtttcatatgttttctattaaaaacgacttacctgataattcaggagagt |
407 |
Q |
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| T |
29252808 |
agtagatctagagcctctattccactaaactctcaatctcaatgcgaaaagtttcacatgttttctattaaaaacgacttacctgataattcaggagagt |
29252709 |
T |
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| Q |
408 |
tgcatttcaacattgtgaatgaaaaaccaaaatacattttgaaactaggag--catgggagtttcgtttccgaccttgctatgagacaaggtgattt |
502 |
Q |
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| T |
29252708 |
tgcatttcaacattgtgaatgaaaaaccaaaatacattttgaaactaggagcacatgggagtttcgtttccgaccttgctatgagacaaggtgattt |
29252612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 458
Target Start/End: Complemental strand, 7250433 - 7250223
Alignment:
| Q |
245 |
atccatgtatccttcttgttactacttgcgattgctatgtgtttcagtaattcaacctttggcagtagacctagagcctctattccactaaactctcaa- |
343 |
Q |
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| T |
7250433 |
atccatgtatccttctttttactacttttgattgctatgtgtttcaataatttaacttttggcagcaga------gtctctattccactaaactctccaa |
7250340 |
T |
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| Q |
344 |
--tctcaatgcgaaaagtttcatatgttttctattaaaaacgacttacctgataattcaggagagttgcatttcaacattgtgaatgaaaaaccaaaata |
441 |
Q |
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| T |
7250339 |
tatctcaagctggaaaaatacttatggtcactattacaaacgacttaccacgtgattcaggagagttagatttccacattgtgaatgaaaaaccaaaata |
7250240 |
T |
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| Q |
442 |
cattttgaaactaggag |
458 |
Q |
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| T |
7250239 |
tcttttgaaactaggag |
7250223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 458
Target Start/End: Complemental strand, 9892909 - 9892840
Alignment:
| Q |
389 |
cctgataattcaggagagttgcatttcaacattgtgaatgaaaaaccaaaatacattttgaaactaggag |
458 |
Q |
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| T |
9892909 |
cctgaaaattcagaagagttacatttcatcattgtgaatgaaaaacctaattatgttttgaaacaaggag |
9892840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 9212168 - 9212239
Alignment:
| Q |
242 |
tcaatccatgtatccttcttgttactacttgcgattgctatgtgtttcagtaattcaacctttggcagtaga |
313 |
Q |
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| T |
9212168 |
tcaaaccatgtatctttgttgctactacttgtgattattatgtgtttcaataattcaacttttggtagtaga |
9212239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 38451498 - 38451540
Alignment:
| Q |
81 |
aaattgtcttttttattaagttgataaaaacaaaatatggtcaaa |
125 |
Q |
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| T |
38451498 |
aaattgtcttttctattaagttgat--aaacaaaatatggtcaaa |
38451540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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