View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_4 (Length: 554)
Name: NF6166_low_4
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 48828145 - 48828677
Alignment:
| Q |
14 |
tcatcataataattaagcgatgctccagtaaacannnnnnnggtacatttgaactaaattgacctaaaattgaattaactggattaatttgcccgtttat |
113 |
Q |
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| T |
48828145 |
tcatcataataattaagcgatactccagtaaacatttttttggtacacttgaactaaattgacctaaaattgaattaactggattaatttgcccgtttat |
48828244 |
T |
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| Q |
114 |
gactaagttgttttgccaattagcatgttgacatgactttaagagtatcttcaatgctaactaacaaaaacagtgatggtgatactacatgttaagtgtc |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
48828245 |
gactaacttgttttgccaattagcatgttgacatgactttaagagtatcttcaatgctaactaaaaataacagtgatggtgatactacatgttaagtgtc |
48828344 |
T |
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| Q |
214 |
ggagtagcatc------------aatgtggtcttcacgtcacatgatgagttttgaagaccaaataacctctcatcagtcaccacttcctctctaaatat |
301 |
Q |
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| T |
48828345 |
ggagtagcatcaatgtacacatcaatgtggtcttcacgtcacatgatgagttttgaagaccaaataacctctcatcagtcgccacttcctctctaaatat |
48828444 |
T |
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| Q |
302 |
tgatgtttgacaaaatggaaaaatattaagttgataaccaaatataactgcttctcggacacttattaagtcggaaattactgcataatcactaccaatt |
401 |
Q |
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| T |
48828445 |
tgatgtttgacaaaatggaaaaatattaagttgataaccatatataactgcttctcggacacttattaagtcggaaattactgcataatcactaccaatt |
48828544 |
T |
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| Q |
402 |
caaattgatgagatttcagttcctttcactatagattgtgattatatataatgacatatgaggatgatnnnnnnnnnnnnnnccaattcagtgaacatca |
501 |
Q |
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| T |
48828545 |
caaattgatgagatttcagttcctttcactatagattgtgattatatataatgacatatgaggataataaaaaaagtaaaaaccaattcagtgaacatca |
48828644 |
T |
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| Q |
502 |
caaaaatttaagggtgaaaacaactaatgacag |
534 |
Q |
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| T |
48828645 |
caaaaatttaagggtgaaaacaactaatgacag |
48828677 |
T |
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