View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6166_low_7 (Length: 453)
Name: NF6166_low_7
Description: NF6166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6166_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 242 - 443
Target Start/End: Complemental strand, 45143092 - 45142892
Alignment:
| Q |
242 |
ataaaaaataaataagtcttattcctttatctgtactcaagagagtgggtaacgtagatatgacagatacaagaatgacattacaagtggctgtaaatct |
341 |
Q |
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| T |
45143092 |
ataaaaaataaataagtcttattcctttatctgtactcaagagagtgggtaacgtagatatgacagatacaagaatgacattaaaagtggctgtaaatct |
45142993 |
T |
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| Q |
342 |
atcaaatgccccgccggaatagcaaaagacattttggtgaatgtcgacaaattcctcttcccagttgannnnnnnnngtaatggacataaaggaagatga |
441 |
Q |
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| T |
45142992 |
atcaaatgccccgcccgaatagcaaaagacattttggtgaatgtcgacaaattcctcttcccagttga-atttttttgtaatggacataaaggaagatga |
45142894 |
T |
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| Q |
442 |
tg |
443 |
Q |
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| T |
45142893 |
tg |
45142892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 45143834 - 45143652
Alignment:
| Q |
1 |
attgtaatgaaaatgggttagttcaatgcccactttgtagttaattagttagcttttattttattattattatgtcactcacttgcacttgt-------- |
92 |
Q |
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| T |
45143834 |
attgtaatgaaaatgggttagttcagtgcccaatttgtagtta----gttatcttttattttattattat---gttactcacttgcacttgtagtaactg |
45143742 |
T |
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| Q |
93 |
------tctgtatctctaatcatcgtgaattctctcaattcaccagttctttctttaatttgaatgtagaattctcacatttccttgcaa |
176 |
Q |
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| T |
45143741 |
ttctgttctgtatctctaatcatcgtgaattctctcaattcaccagttctttctttaatttgaatgtagaattgtcacatttccttgcaa |
45143652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 45143571 - 45143516
Alignment:
| Q |
179 |
tatagtttgctatgtcaataatagactctctctt-ggtttcccacataaacctcca |
233 |
Q |
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| T |
45143571 |
tatagtttgctatgtcaataatagactctctcttgggtttcccacataaacctcca |
45143516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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