View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6168_high_1 (Length: 673)
Name: NF6168_high_1
Description: NF6168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6168_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 19 - 661
Target Start/End: Original strand, 35766334 - 35766976
Alignment:
| Q |
19 |
gttgtaccctttacctgtttgtcgtttgatcaagtgctcgaagatcacgcttacaaccgacccttattatcgattatgggatatggattgcaattttctt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35766334 |
gttgtaccctttacctgtttgtcgtttgatcaagtgctcgaagatcacacttacaaccgacccttattatcgattatgggataaggattgcaattttctt |
35766433 |
T |
|
| Q |
119 |
attggttcatgcaatggatggctttgtttgcttggttattcttaccactttacatatataaatacctggctgcgtttctggaaccctgccactcataaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766434 |
attggttcatgcaatggatggctttgtttgcttggttattcttaccactttacatatataaatacctggctgcgtttctggaaccctgccactcataaaa |
35766533 |
T |
|
| Q |
219 |
tttccccaaagttagggcatttttgggattatttatgtctgtatgtatatccattttaagtttgggtttggttttgattgataaattgtcggagacttat |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766534 |
tttccccaaagttagggcatttttgggattatttatgtctgtatgtatatccattttaagtttgggtttggttttgattgataaattgtcggagacttat |
35766633 |
T |
|
| Q |
319 |
aaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcagtcaaagttttcctg |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35766634 |
aaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcctg |
35766733 |
T |
|
| Q |
419 |
tggctcttgttccttttaatacaaaccatggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcgcaataaacttttttatgt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35766734 |
tggctcttgttccttttaatacaaaccatggtgtgaatgatggtgtgtatctgaatggttgtctaaattggttggcccttcgcaataaacttttttatgt |
35766833 |
T |
|
| Q |
519 |
tggtgtttctggttaggagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggg |
618 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766834 |
tggtgtttctggttaggagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggg |
35766933 |
T |
|
| Q |
619 |
gttttgatgaaacgtcagctattgaaccattgttaagtatatt |
661 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766934 |
gttttgatgaaacgtcagctattgaaccattgttaagtatatt |
35766976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 19356937 - 19356978
Alignment:
| Q |
120 |
ttggttcatgcaatggatggctttgtttgcttggttattctt |
161 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
19356937 |
ttggttcttgcaatggattgctttgtttgcttggttattctt |
19356978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 536 - 661
Target Start/End: Original strand, 36260088 - 36260211
Alignment:
| Q |
536 |
agaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtca |
635 |
Q |
| |
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|||||||| || ||| | |||||||||||||||| ||||| |||| |||| ||||| |||||| |||||||||||||| | ||||||||||||| |||| |
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| T |
36260088 |
agaaaatgaatgttaaaaaatttgtgattgtttcacttgatctggaaaca--gagacatacacaaagttgatgcctccttgcggttttgatgaaatgtca |
36260185 |
T |
|
| Q |
636 |
gctattgaaccattgttaagtatatt |
661 |
Q |
| |
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||||||| |||| | || ||||||| |
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| T |
36260186 |
cctattgagccatcggtatgtatatt |
36260211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 20495168 - 20495249
Alignment:
| Q |
80 |
ccttattatcgattatgggatatggattgcaattttcttattggttcatgcaatggatggctttgtttgcttggttattctt |
161 |
Q |
| |
|
||||||||||||||| |||||| ||| || | | | |||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
20495168 |
ccttattatcgattaagggataaggagtgtcaatatgttattggttcttgcaatggatggctttgtttgcttggtttttctt |
20495249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 630
Target Start/End: Original strand, 36255221 - 36255293
Alignment:
| Q |
556 |
tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaa |
630 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |||||| ||||| ||| |||||||||| | ||||||||||||| |
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|
| T |
36255221 |
tttgtgattgttgcgcttgatctgggaac--agagacatacacgcagctgatgcctccgcgtggttttgatgaaa |
36255293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 418
Target Start/End: Original strand, 46769018 - 46769088
Alignment:
| Q |
348 |
tgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcagtcaaagttttcctg |
418 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||| ||||| |||||||| | |||||||||||||| |
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| T |
46769018 |
tgaaaatagaactcatgtgcaagttttgagtgtgggtgataatatttggagaactattcaaagttttcctg |
46769088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 20495533 - 20495586
Alignment:
| Q |
447 |
tggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcg |
500 |
Q |
| |
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||||||||||||||||| |||| |||||||| |||| |||||||| || ||||| |
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| T |
20495533 |
tggtgtgaatgatggtgtgtatttgaatggtagtctgaattggttggctcttcg |
20495586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 29598159 - 29598115
Alignment:
| Q |
120 |
ttggttcatgcaatggatggctttgtttgcttggttattcttacc |
164 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29598159 |
ttggttcatgcaatggattgctttgtttgcttggttattcttacc |
29598115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 29641813 - 29641856
Alignment:
| Q |
120 |
ttggttcatgcaatggatggctttgtttgcttggttattcttac |
163 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29641813 |
ttggttcatgcaatggattgctttgtttgcttggttattcttac |
29641856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 29821219 - 29821176
Alignment:
| Q |
120 |
ttggttcatgcaatggatggctttgtttgcttggttattcttac |
163 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
29821219 |
ttggttcatgcaatggattgctttgtttgctcagttattcttac |
29821176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 42297562 - 42297604
Alignment:
| Q |
120 |
ttggttcatgcaatggatggctttgtttgcttggttattctta |
162 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
42297562 |
ttggttcatgcaatggattgatttgtttgctcggttattctta |
42297604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 29647133 - 29647174
Alignment:
| Q |
122 |
ggttcatgcaatggatggctttgtttgcttggttattcttac |
163 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||| |
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|
| T |
29647133 |
ggttcatgcaatagattgctttgtttgctcggttattcttac |
29647174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 30398771 - 30398820
Alignment:
| Q |
348 |
tgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttgga |
397 |
Q |
| |
|
|||| |||||||| |||||| |||||||||| ||| |||||||||||||| |
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|
| T |
30398771 |
tgaaaatagaactcatgtgcgagttttaagtgtggctaataatgtttgga |
30398820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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