View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6168_high_2 (Length: 667)
Name: NF6168_high_2
Description: NF6168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6168_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 350 - 651
Target Start/End: Complemental strand, 7153342 - 7153040
Alignment:
| Q |
350 |
tatatatctctagataacttaacaagtttccaaagatgaatcttccacaaagcctatttatcatatgataaattcgtttcatacaaaagacaaaaaggta |
449 |
Q |
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| T |
7153342 |
tatatatctctagatagcttaacaagtttccaa-gatgaatcttctacaaagtctatttatcatatgataaattcgtttcatacaaaagacaaaaaggta |
7153244 |
T |
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| Q |
450 |
aggtaaataggaacccctagtcaaacacccttagaagctaaaaattcatcaagagcttcctcaagctttctatcctcaaatactc--agtgtttcaggag |
547 |
Q |
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| T |
7153243 |
aggtaaataggatcccctagtcaaacacccttagaagctaaaaattcatcaagagcttcctcaagctttctatcctcaaatactcatagtgttttaggag |
7153144 |
T |
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| Q |
548 |
acaccaaacttcttcaataaatcttggtcttttaaatagagatgaagtatattagcgttgttgaagaaatctttgtctttgaatgatagtataaatgtta |
647 |
Q |
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| T |
7153143 |
acaccaaactgcttcaataaatcttggtcttttaaatagagatgaagtatattagcgttgttgaagaaatctttgtctttgaatgatagtataaatgtta |
7153044 |
T |
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| Q |
648 |
agat |
651 |
Q |
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|||| |
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| T |
7153043 |
agat |
7153040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 7153644 - 7153343
Alignment:
| Q |
9 |
agcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaag |
108 |
Q |
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| T |
7153644 |
agcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaag |
7153545 |
T |
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| Q |
109 |
tggtcatagatctcatcttcagaaaattgaaatgttagat----tttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgt-- |
202 |
Q |
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| T |
7153544 |
tggtcatagatctcatcttcagaaaattgaaatgttagatttaatttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgtat |
7153445 |
T |
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| Q |
203 |
--actagagtcaatataagtcataaatctctgcttattactaattctacaagtatttatccaagaaatagaatgtatattgtgagactcatgagtatcca |
300 |
Q |
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| T |
7153444 |
aaactatagtcaatataagtcataaatctctgcttattactaactctacaagtatttatccaagaaatagaatgtatcttgtgagactcatgagtatcca |
7153345 |
T |
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| Q |
301 |
ac |
302 |
Q |
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|| |
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| T |
7153344 |
ac |
7153343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 7159729 - 7159548
Alignment:
| Q |
20 |
tggaaccaatgtgtgtatttgtgtgtatg--agtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatag |
117 |
Q |
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| T |
7159729 |
tggaaccaatatgtgtaattgtgtgtatattagtacacatttaatatataagaagcatgtgt--ttccttttt---tagaataatatgaggtggtcatgg |
7159635 |
T |
|
| Q |
118 |
atctcatcttcagaaaattgaaatgtt---agattttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgta |
203 |
Q |
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| T |
7159634 |
atctaaccttcatcaaattcaaatgttcttagattttgttgaaggtgttatgagagc--tatgatcgctttgtgtttggttgtcttgta |
7159548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 631
Target Start/End: Original strand, 12139762 - 12139837
Alignment:
| Q |
556 |
cttcttcaataaatcttggtcttttaaatagagatgaagtatattagcgttgttgaagaaatctttgtctttgaat |
631 |
Q |
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| T |
12139762 |
cttcttcaatcgaacttggtcctttatatagagatgaagtagatgatcgttgatgaagaaatccttgtcttagaat |
12139837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 632
Target Start/End: Original strand, 18953415 - 18953491
Alignment:
| Q |
556 |
cttcttcaataaatcttggtcttttaaatagagatgaagtatattagcgttgttgaagaaatctttgtctttgaatg |
632 |
Q |
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| T |
18953415 |
cttcttcaatcaaacttgatcctttatatagagatgacgtagatgatcgttgatgaagaaacccttgtctttgaatg |
18953491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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