View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6168_high_3 (Length: 257)

Name: NF6168_high_3
Description: NF6168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6168_high_3
NF6168_high_3
[»] chr6 (2 HSPs)
chr6 (16-75)||(28842160-28842219)
chr6 (25-63)||(19545722-19545760)
[»] chr1 (5 HSPs)
chr1 (25-77)||(23034856-23034908)
chr1 (25-76)||(31343550-31343601)
chr1 (22-76)||(27318204-27318258)
chr1 (22-63)||(24853339-24853380)
chr1 (32-68)||(31343715-31343751)
[»] chr4 (12 HSPs)
chr4 (22-69)||(18321785-18321832)
chr4 (22-69)||(18453114-18453161)
chr4 (16-74)||(12249634-12249692)
chr4 (25-68)||(17338310-17338353)
chr4 (44-88)||(16283493-16283537)
chr4 (22-57)||(15871544-15871579)
chr4 (25-76)||(20872613-20872664)
chr4 (27-65)||(15888929-15888967)
chr4 (22-56)||(15889121-15889155)
chr4 (25-63)||(18555298-18555336)
chr4 (39-76)||(4087904-4087941)
chr4 (26-70)||(14185700-14185744)
[»] chr2 (8 HSPs)
chr2 (215-257)||(16221699-16221741)
chr2 (22-76)||(29638899-29638953)
chr2 (15-68)||(22497683-22497736)
chr2 (27-70)||(18985625-18985668)
chr2 (25-64)||(22497602-22497641)
chr2 (26-88)||(23652353-23652415)
chr2 (21-62)||(22497873-22497914)
chr2 (32-68)||(21554511-21554547)
[»] chr8 (3 HSPs)
chr8 (15-68)||(9798924-9798977)
chr8 (32-76)||(21326132-21326176)
chr8 (32-70)||(21321540-21321578)
[»] chr3 (14 HSPs)
chr3 (15-64)||(16999692-16999741)
chr3 (15-76)||(22653761-22653822)
chr3 (26-88)||(17792870-17792932)
chr3 (26-88)||(19101310-19101372)
chr3 (24-57)||(21976609-21976642)
chr3 (24-57)||(21999040-21999073)
chr3 (26-70)||(3264307-3264351)
chr3 (26-69)||(15958943-15958986)
chr3 (22-57)||(16358427-16358462)
chr3 (27-65)||(21976777-21976815)
chr3 (27-65)||(21999208-21999246)
chr3 (27-65)||(22161403-22161441)
chr3 (31-68)||(15958760-15958797)
chr3 (24-57)||(22161207-22161240)
[»] chr7 (4 HSPs)
chr7 (21-69)||(12346623-12346671)
chr7 (127-202)||(10002835-10002910)
chr7 (22-64)||(28756399-28756441)
chr7 (27-76)||(11091080-11091129)
[»] scaffold0094 (1 HSPs)
scaffold0094 (25-63)||(3078-3116)
[»] chr5 (9 HSPs)
chr5 (40-89)||(23908686-23908735)
chr5 (40-76)||(42688129-42688165)
chr5 (25-75)||(13938624-13938674)
chr5 (32-110)||(25581886-25581964)
chr5 (25-63)||(32948276-32948314)
chr5 (24-57)||(22755229-22755262)
chr5 (40-89)||(24144179-24144228)
chr5 (21-70)||(24144382-24144431)
chr5 (25-73)||(32948465-32948513)
[»] scaffold0512 (1 HSPs)
scaffold0512 (21-69)||(9669-9717)
[»] scaffold0290 (1 HSPs)
scaffold0290 (27-70)||(12245-12288)


Alignment Details
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 28842219 - 28842160
Alignment:
Q  16 aaaggaaaatgaaagctaacatctatatctacaactttcatgaagacacctaaactcaat 75  Q
    ||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  28842219 aaaggcaaatgaaagctaacatccatatatacaactttcaggaagacacctaaactcaat 28842160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 19545760 - 19545722
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagaca 63  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  19545760 tgaaagctaacatcgatatctaccactttcatgaagaca 19545722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 23034856 - 23034908
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacacctaaactcaatta 77  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  23034856 tgaaagctaacatccatatctacaaatttcatgaagacacctaaacttaatta 23034908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 31343550 - 31343601
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    |||||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  31343550 tgaaagatgacatcaatatctacaactttcatgaagacacctaaattcaatt 31343601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 27318204 - 27318258
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    ||||||||| ||||||| ||||||||||||||||| | ||||||||| |||||||    
T  27318204 aaatgaaaggtaacatccatatctacaactttcataatgacacctaagctcaatt 27318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 24853380 - 24853339
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatgaagaca 63  Q
    ||||||||||||||| | | ||||||||||||||||||||||    
T  24853380 aaatgaaagctaacacccacatctacaactttcatgaagaca 24853339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 31343715 - 31343751
Alignment:
Q  32 taacatctatatctacaactttcatgaagacacctaa 68  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  31343715 taacatccatatctataactttcatgaagacacctaa 31343751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 18321832 - 18321785
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatgaagacacctaaa 69  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  18321832 aaatgaaagctaacatccatatctacaattttcatgaagacacctaaa 18321785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 18453114 - 18453161
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatgaagacacctaaa 69  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  18453114 aaatgaaagctaacatccatatctacaattttcatgaagacacctaaa 18453161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 12249692 - 12249634
Alignment:
Q  16 aaaggaaaatgaaagctaacatctatatctacaactttcatgaagacacctaaactcaa 74  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||| | |||||||||    
T  12249692 aaaggcaaatgaaagctaacatccatatctacaactttcatgaggacgcataaactcaa 12249634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 17338310 - 17338353
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacacctaa 68  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  17338310 tgaaagctaacatccatatctacaactttcatgaagacatctaa 17338353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 16283537 - 16283493
Alignment:
Q  44 ctacaactttcatgaagacacctaaactcaattaggcatagaaaa 88  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||    
T  16283537 ctacaactttcatgaagacacctaagctcaattcggaatagaaaa 16283493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 15871579 - 15871544
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatg 57  Q
    ||||||||||||||||||||||||| ||||||||||    
T  15871579 aaatgaaagctaacatctatatctaaaactttcatg 15871544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 20872664 - 20872613
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    ||||| |||||||| ||||||||||  ||||||||||||||||||| |||||    
T  20872664 tgaaacctaacatccatatctacaatgttcatgaagacacctaaacccaatt 20872613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 15888967 - 15888929
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacc 65  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  15888967 aaagctaacatgcatatctacaactttcatgaagacacc 15888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 15889155 - 15889121
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcat 56  Q
    ||||||||||||||||||||||||| |||||||||    
T  15889155 aaatgaaagctaacatctatatctaaaactttcat 15889121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 18555336 - 18555298
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagaca 63  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  18555336 tgaaagctaacatcgatatctaccactttcatgaagaca 18555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 4087904 - 4087941
Alignment:
Q  39 tatatctacaactttcatgaagacacctaaactcaatt 76  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  4087904 tatatctacaactttcacgaagacatctaaactcaatt 4087941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 14185700 - 14185744
Alignment:
Q  26 gaaagctaacatctatatctacaactttcatgaagacacctaaac 70  Q
    ||||||||||||| ||| ||||||||||| ||||||| |||||||    
T  14185700 gaaagctaacatccatacctacaactttcgtgaagactcctaaac 14185744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 16221741 - 16221699
Alignment:
Q  215 tctactcaattctctaacaccacaagcttacacgattcaaatt 257  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  16221741 tctactcaattctctaacaccacaagcttacatgattcaaatt 16221699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 29638899 - 29638953
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    ||||||||| ||||||| | |||||||||||||||||| |||||||||| |||||    
T  29638899 aaatgaaagataacatccacatctacaactttcatgaatacacctaaacccaatt 29638953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 22497736 - 22497683
Alignment:
Q  15 caaaggaaaatgaaagctaacatctatatctacaactttcatgaagacacctaa 68  Q
    ||||||| | |||||||||||||  |||||||||||||||||||||| ||||||    
T  22497736 caaaggatagtgaaagctaacattcatatctacaactttcatgaagatacctaa 22497683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 18985668 - 18985625
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacctaaac 70  Q
    |||||||||||  |||||||||||||||||||||||||| ||||    
T  18985668 aaagctaacattcatatctacaactttcatgaagacaccgaaac 18985625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 22497641 - 22497602
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacac 64  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  22497641 tgaaagctaacaaccatatctacaactttcatgaagacac 22497602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 23652415 - 23652353
Alignment:
Q  26 gaaagctaacatctatatctacaactttcatgaagacacctaaactcaattaggcatagaaaa 88  Q
    |||| |||||||| ||| |||||||||||||||||| |||||  ||||||| || ||||||||    
T  23652415 gaaatctaacatccatacctacaactttcatgaagatacctaggctcaattcggaatagaaaa 23652353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 22497914 - 22497873
Alignment:
Q  21 aaaatgaaagctaacatctatatctacaactttcatgaagac 62  Q
    ||||||||| |||||||| |||| ||||||||||||||||||    
T  22497914 aaaatgaaatctaacatccatatttacaactttcatgaagac 22497873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 21554547 - 21554511
Alignment:
Q  32 taacatctatatctacaactttcatgaagacacctaa 68  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  21554547 taacatcaatacctacaactttcatgaagacacctaa 21554511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 9798977 - 9798924
Alignment:
Q  15 caaaggaaaatgaaagctaacatctatatctacaactttcatgaagacacctaa 68  Q
    |||||| | ||||||||||||||  |||||||||||||||||||||||||||||    
T  9798977 caaaggcagatgaaagctaacattcatatctacaactttcatgaagacacctaa 9798924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 21326176 - 21326132
Alignment:
Q  32 taacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||    
T  21326176 taacatctatatctacaactttcgtgaaggcacctaaacccaatt 21326132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 21321578 - 21321540
Alignment:
Q  32 taacatctatatctacaactttcatgaagacacctaaac 70  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  21321578 taacatctatatctacaactttcgtgaaggcacctaaac 21321540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 16999741 - 16999692
Alignment:
Q  15 caaaggaaaatgaaagctaacatctatatctacaactttcatgaagacac 64  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  16999741 caaaggaaaatgaaagataacattcatatctacaactttcatgaagacac 16999692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 22653822 - 22653761
Alignment:
Q  15 caaaggaaaatgaaagctaacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    |||||||| || |||||||||||| || ||||||||||||| ||||||||||||| ||||||    
T  22653822 caaaggaagataaaagctaacatccatttctacaactttcacgaagacacctaaattcaatt 22653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 17792870 - 17792932
Alignment:
Q  26 gaaagctaacatctatatctacaactttcatgaagacacctaaactcaattaggcatagaaaa 88  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| ||||||| || ||||||||    
T  17792870 gaaaactaacatccatacctaaaactttcatgaagacacctaagctcaattcgggatagaaaa 17792932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 19101310 - 19101372
Alignment:
Q  26 gaaagctaacatctatatctacaactttcatgaagacacctaaactcaattaggcatagaaaa 88  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| ||||||| || ||||||||    
T  19101310 gaaaactaacatccatacctaaaactttcatgaagacacctaagctcaattcgggatagaaaa 19101372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 21976609 - 21976642
Alignment:
Q  24 atgaaagctaacatctatatctacaactttcatg 57  Q
    ||||||||||||||||||||||||||||||||||    
T  21976609 atgaaagctaacatctatatctacaactttcatg 21976642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 21999040 - 21999073
Alignment:
Q  24 atgaaagctaacatctatatctacaactttcatg 57  Q
    ||||||||||||||||||||||||||||||||||    
T  21999040 atgaaagctaacatctatatctacaactttcatg 21999073  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 3264351 - 3264307
Alignment:
Q  26 gaaagctaacatctatatctacaactttcatgaagacacctaaac 70  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||    
T  3264351 gaaatctaacatccatacctacaactttcatgaagacacctaaac 3264307  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 15958986 - 15958943
Alignment:
Q  26 gaaagctaacatctatatctacaactttcatgaagacacctaaa 69  Q
    ||||||||||||||||| |||||||||||||||||  |||||||    
T  15958986 gaaagctaacatctataactacaactttcatgaagggacctaaa 15958943  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 16358462 - 16358427
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatg 57  Q
    ||||||||||||||||||||||||| ||||||||||    
T  16358462 aaatgaaagctaacatctatatctaaaactttcatg 16358427  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 21976777 - 21976815
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacc 65  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  21976777 aaagctaacatatatagctacaactttcatgaagacacc 21976815  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 21999208 - 21999246
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacc 65  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  21999208 aaagctaacatatatagctacaactttcatgaagacacc 21999246  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 22161403 - 22161441
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacc 65  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  22161403 aaagctaacatatatagctacaactttcatgaagacacc 22161441  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 15958797 - 15958760
Alignment:
Q  31 ctaacatctatatctacaactttcatgaagacacctaa 68  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  15958797 ctaacatccatacctacaactttcatgaagacacctaa 15958760  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 22161207 - 22161240
Alignment:
Q  24 atgaaagctaacatctatatctacaactttcatg 57  Q
    |||||| |||||||||||||||||||||||||||    
T  22161207 atgaaaactaacatctatatctacaactttcatg 22161240  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 12346671 - 12346623
Alignment:
Q  21 aaaatgaaagctaacatctatatctacaactttcatgaagacacctaaa 69  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  12346671 aaaatgaaatctaacatacatatctacaactttcatgaagacacctaaa 12346623  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 10002835 - 10002910
Alignment:
Q  127 acctctttcgacttcatttttcgatctaattctcaccaaactcgacccaaaacttaatactaagtcaatccattca 202  Q
    ||||||||||||| |||| ||||||| ||  ||||||||||||||||| |||||| ||||||| || || ||||||    
T  10002835 acctctttcgactccattattcgatccaacactcaccaaactcgaccctaaacttcatactaattctattcattca 10002910  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 28756441 - 28756399
Alignment:
Q  22 aaatgaaagctaacatctatatctacaactttcatgaagacac 64  Q
    ||||||||| ||||||  |||||||||||||||||||||||||    
T  28756441 aaatgaaagttaacattgatatctacaactttcatgaagacac 28756399  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 11091080 - 11091129
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacctaaactcaatt 76  Q
    |||||||||| | ||||||||||||||||||||||| || ||||| ||||    
T  11091080 aaagctaacaaccatatctacaactttcatgaagactcccaaacttaatt 11091129  T

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Target: scaffold0094 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 3116 - 3078
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagaca 63  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3116 tgaaagctaacatcgatatctacaactttcatgaagaca 3078  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 23908686 - 23908735
Alignment:
Q  40 atatctacaactttcatgaagacacctaaactcaattaggcatagaaaat 89  Q
    |||||||||||||||||||||||||| ||||  ||||||| |||||||||    
T  23908686 atatctacaactttcatgaagacaccaaaacctaattaggaatagaaaat 23908735  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 42688165 - 42688129
Alignment:
Q  40 atatctacaactttcatgaagacacctaaactcaatt 76  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42688165 atatctacaactttcatgaagacacctaaattcaatt 42688129  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 13938624 - 13938674
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacacctaaactcaat 75  Q
    ||||| |||||||  ||||||||||||||||||||||||| ||||| ||||    
T  13938624 tgaaatctaacattcatatctacaactttcatgaagacacataaacccaat 13938674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 25581964 - 25581886
Alignment:
Q  32 taacatctatatctacaactttcatgaagacacctaaactcaattaggcatagaaaattttcagtttttcttttcgttt 110  Q
    ||||||| |||||||||||||||||||||||| | ||||  ||||| | |||||||| |  |||||||| |||| ||||    
T  25581964 taacatccatatctacaactttcatgaagacatcaaaacctaattatgaatagaaaagtcccagtttttatttttgttt 25581886  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 32948276 - 32948314
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagaca 63  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  32948276 tgaaagctaaaatccatatctacaactttcatgaagaca 32948314  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 22755229 - 22755262
Alignment:
Q  24 atgaaagctaacatctatatctacaactttcatg 57  Q
    ||||||||||||||| ||||||||||||||||||    
T  22755229 atgaaagctaacatccatatctacaactttcatg 22755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 24144228 - 24144179
Alignment:
Q  40 atatctacaactttcatgaagacacctaaactcaattaggcatagaaaat 89  Q
    ||||||||||||||||||||||||||||| ||  ||| || |||||||||    
T  24144228 atatctacaactttcatgaagacacctaagcttgattcggaatagaaaat 24144179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 24144431 - 24144382
Alignment:
Q  21 aaaatgaaagctaacatctatatctacaactttcatgaagacacctaaac 70  Q
    |||||||||| ||||||  ||| ||||| |||||||||||||||||||||    
T  24144431 aaaatgaaagataacattcatacctacagctttcatgaagacacctaaac 24144382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32948465 - 32948513
Alignment:
Q  25 tgaaagctaacatctatatctacaactttcatgaagacacctaaactca 73  Q
    |||||| ||||||| |||| |||| |||||||||||||| |||||||||    
T  32948465 tgaaagataacatccatatatacatctttcatgaagacatctaaactca 32948513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 9669 - 9717
Alignment:
Q  21 aaaatgaaagctaacatctatatctacaactttcatgaagacacctaaa 69  Q
    ||||||||| |||| || ||||||||||||||||||||| |||||||||    
T  9669 aaaatgaaatctaatatttatatctacaactttcatgaatacacctaaa 9717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 12288 - 12245
Alignment:
Q  27 aaagctaacatctatatctacaactttcatgaagacacctaaac 70  Q
    |||||||||||  |||||||||||||||||||||||||| ||||    
T  12288 aaagctaacattcatatctacaactttcatgaagacaccgaaac 12245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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