View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6168_low_3 (Length: 415)
Name: NF6168_low_3
Description: NF6168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6168_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 33376684 - 33377072
Alignment:
| Q |
19 |
aggttactacataggaggtgatagtatcatcaacaatgatgcttcttggaacagattctccttatactttccaccaagaaacacatatgcaacttcacat |
118 |
Q |
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| T |
33376684 |
aggttactacataggaggtgatagtatcatcaacattgatgcttcttggaacagattctccttatactttccaccaagaaacacatatgcaacttcacat |
33376783 |
T |
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| Q |
119 |
cctcaccttttcaaaattgaaggcactatatcctttacaaccaacaatgatgcttcatattataatcatcatcatagttttggttacttaaccttcaagc |
218 |
Q |
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| T |
33376784 |
cctcaccttttcaaaattgaaggcactatatcctttacaaccaacaatgatgcttcatattataatcatcatcatcatatgggttacttaaccttcaagc |
33376883 |
T |
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| Q |
219 |
ttgatggtttttggtctcaatcttcagggaatgtttgcatggttggaaaaagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttt |
318 |
Q |
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| T |
33376884 |
ttgatggtttttggtctcaatcttcagggaatgtttgcatggttggaaaaagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttt |
33376983 |
T |
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| Q |
319 |
taaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagttctgaaaaggatgatgatg |
407 |
Q |
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| T |
33376984 |
taaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagttctgaaaaggatgatgatg |
33377072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 405
Target Start/End: Original strand, 33383019 - 33383217
Alignment:
| Q |
207 |
taaccttcaagcttgatggtttttggtctcaatcttcagggaatgtttgcatggttggaaaaagcaaaggtgtttcgaaaaaaggtgattctctcaatct |
306 |
Q |
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| T |
33383019 |
taactttcaagcttgaagggttttggtcaaaatcttcaggaaaagtttgtatggttggaacaggaattggttattcacaaacaggtgattctcttaatct |
33383118 |
T |
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| Q |
307 |
tgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagttctgaaaaggatgatga |
405 |
Q |
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| T |
33383119 |
tgatgctgtctttaagcttaacaatgttttccattcaagtaacatcactagtttgatcagtggaagcttagagagtttgagttctgaaaagggtgatga |
33383217 |
T |
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