View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6168_low_5 (Length: 251)

Name: NF6168_low_5
Description: NF6168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6168_low_5
NF6168_low_5
[»] chr1 (29 HSPs)
chr1 (15-100)||(10186698-10186783)
chr1 (17-100)||(43358755-43358838)
chr1 (15-100)||(44524141-44524226)
chr1 (15-100)||(17414655-17414740)
chr1 (10-100)||(35626167-35626257)
chr1 (17-100)||(19310826-19310909)
chr1 (15-100)||(3465473-3465558)
chr1 (15-100)||(3468067-3468152)
chr1 (159-248)||(19310958-19311047)
chr1 (15-100)||(28574297-28574382)
chr1 (15-100)||(28598309-28598394)
chr1 (173-251)||(13654468-13654546)
chr1 (13-90)||(1187826-1187903)
chr1 (159-251)||(10186548-10186640)
chr1 (159-251)||(16051330-16051422)
chr1 (161-249)||(43358890-43358978)
chr1 (15-90)||(16051206-16051281)
chr1 (161-251)||(21431648-21431739)
chr1 (161-244)||(28574444-28574527)
chr1 (161-244)||(28598456-28598539)
chr1 (159-251)||(44523998-44524092)
chr1 (161-245)||(3468215-3468299)
chr1 (15-100)||(13654335-13654422)
chr1 (26-100)||(21431791-21431865)
chr1 (159-251)||(1187956-1188048)
chr1 (13-57)||(29681588-29681632)
chr1 (13-57)||(48366213-48366257)
chr1 (166-220)||(17414566-17414620)
chr1 (168-231)||(3701485-3701548)
[»] chr6 (15 HSPs)
chr6 (160-251)||(21937712-21937803)
chr6 (10-100)||(21936799-21936889)
chr6 (160-251)||(21936653-21936744)
chr6 (15-100)||(2887490-2887575)
chr6 (160-251)||(24509846-24509937)
chr6 (15-100)||(2889212-2889297)
chr6 (15-100)||(21275773-21275858)
chr6 (15-100)||(24508947-24509032)
chr6 (164-251)||(24508827-24508914)
chr6 (15-100)||(24509703-24509788)
chr6 (161-244)||(21275920-21276003)
chr6 (15-100)||(11183285-11183370)
chr6 (15-100)||(20752237-20752322)
chr6 (13-100)||(21937568-21937655)
chr6 (164-251)||(20752105-20752192)
[»] chr2 (15 HSPs)
chr2 (161-251)||(30283417-30283507)
chr2 (161-251)||(42780320-42780410)
chr2 (15-100)||(716267-716352)
chr2 (10-100)||(30283560-30283650)
chr2 (15-100)||(14917501-14917586)
chr2 (162-247)||(716402-716487)
chr2 (15-100)||(17720645-17720730)
chr2 (15-100)||(42780184-42780269)
chr2 (15-100)||(45120386-45120471)
chr2 (161-245)||(45120534-45120618)
chr2 (161-244)||(17720500-17720583)
chr2 (161-244)||(14917356-14917439)
chr2 (159-246)||(20892321-20892408)
chr2 (15-100)||(16284437-16284523)
chr2 (159-200)||(16284573-16284614)
[»] chr3 (43 HSPs)
chr3 (159-249)||(29827549-29827638)
chr3 (15-100)||(5458131-5458216)
chr3 (15-100)||(5481607-5481692)
chr3 (15-100)||(6858174-6858259)
chr3 (15-100)||(8458311-8458396)
chr3 (15-100)||(8464750-8464835)
chr3 (15-100)||(20891059-20891144)
chr3 (161-249)||(49784633-49784721)
chr3 (13-100)||(3187573-3187660)
chr3 (10-100)||(33703294-33703384)
chr3 (15-100)||(1302364-1302449)
chr3 (15-100)||(4049807-4049892)
chr3 (15-100)||(6853071-6853156)
chr3 (15-92)||(10591422-10591499)
chr3 (15-100)||(10673057-10673142)
chr3 (15-100)||(10678172-10678257)
chr3 (15-100)||(31076521-31076606)
chr3 (161-244)||(4049955-4050038)
chr3 (161-244)||(10584832-10584915)
chr3 (15-100)||(4054941-4055026)
chr3 (15-100)||(31081626-31081711)
chr3 (15-100)||(33702719-33702804)
chr3 (161-245)||(8464897-8464981)
chr3 (161-244)||(1302218-1302301)
chr3 (161-244)||(4055089-4055172)
chr3 (161-244)||(6852926-6853009)
chr3 (161-244)||(6858029-6858112)
chr3 (161-244)||(10591269-10591352)
chr3 (161-244)||(10672912-10672995)
chr3 (13-100)||(18024267-18024354)
chr3 (161-244)||(33702573-33702656)
chr3 (15-92)||(10584985-10585062)
chr3 (161-245)||(5457984-5458068)
chr3 (161-245)||(5481461-5481545)
chr3 (161-244)||(8458458-8458542)
chr3 (161-244)||(31076376-31076459)
chr3 (161-244)||(31081481-31081564)
chr3 (13-100)||(49784494-49784581)
chr3 (15-100)||(29827429-29827509)
chr3 (161-220)||(33703447-33703506)
chr3 (169-231)||(20891182-20891244)
chr3 (161-244)||(10678025-10678110)
chr3 (170-230)||(18024168-18024228)
[»] chr7 (26 HSPs)
chr7 (15-100)||(14610364-14610449)
chr7 (15-100)||(12851674-12851759)
chr7 (159-251)||(5440267-5440359)
chr7 (159-251)||(5449277-5449369)
chr7 (15-100)||(12856789-12856874)
chr7 (15-100)||(26051021-26051106)
chr7 (15-100)||(26056134-26056219)
chr7 (15-100)||(26060380-26060465)
chr7 (15-100)||(26065493-26065578)
chr7 (159-247)||(4181374-4181462)
chr7 (10-100)||(11056620-11056710)
chr7 (161-244)||(12856936-12857019)
chr7 (15-88)||(35352422-35352495)
chr7 (161-244)||(26051168-26051251)
chr7 (161-244)||(26056281-26056364)
chr7 (161-244)||(26060527-26060610)
chr7 (161-244)||(26065640-26065723)
chr7 (13-100)||(37459960-37460047)
chr7 (15-100)||(4181501-4181585)
chr7 (15-100)||(5440407-5440492)
chr7 (15-100)||(5449417-5449502)
chr7 (161-245)||(12851823-12851907)
chr7 (13-57)||(5436692-5436736)
chr7 (164-251)||(37459830-37459917)
chr7 (197-244)||(14610512-14610559)
chr7 (159-242)||(35352296-35352380)
[»] chr4 (28 HSPs)
chr4 (15-100)||(18737162-18737247)
chr4 (13-100)||(18670838-18670925)
chr4 (15-100)||(32429402-32429487)
chr4 (159-251)||(30019815-30019906)
chr4 (161-244)||(32429267-32429350)
chr4 (10-100)||(18716484-18716574)
chr4 (14-100)||(34128356-34128442)
chr4 (15-100)||(35096028-35096113)
chr4 (15-98)||(54859278-54859361)
chr4 (164-249)||(3409577-3409662)
chr4 (15-100)||(30019969-30020054)
chr4 (15-88)||(35090915-35090988)
chr4 (15-100)||(47071408-47071493)
chr4 (159-251)||(54859144-54859237)
chr4 (161-244)||(35091062-35091145)
chr4 (161-244)||(35096175-35096258)
chr4 (15-96)||(3424823-3424904)
chr4 (15-100)||(34279610-34279695)
chr4 (164-244)||(14643719-14643799)
chr4 (159-251)||(18670975-18671067)
chr4 (159-251)||(34279480-34279572)
chr4 (15-88)||(14643861-14643934)
chr4 (159-248)||(34128230-34128319)
chr4 (159-249)||(25618276-25618359)
chr4 (159-239)||(22118850-22118932)
chr4 (164-230)||(3424698-3424764)
chr4 (159-214)||(47071530-47071585)
chr4 (43-99)||(34602065-34602121)
[»] chr8 (22 HSPs)
chr8 (13-100)||(10341076-10341163)
chr8 (15-100)||(34108229-34108314)
chr8 (15-100)||(14315030-14315115)
chr8 (15-100)||(14318734-14318819)
chr8 (15-100)||(18494295-18494380)
chr8 (15-100)||(26981995-26982080)
chr8 (15-100)||(26987108-26987193)
chr8 (159-251)||(18608617-18608708)
chr8 (16-87)||(18885065-18885136)
chr8 (161-244)||(26981849-26981932)
chr8 (17-100)||(43956968-43957051)
chr8 (15-100)||(18608747-18608832)
chr8 (15-100)||(25953278-25953363)
chr8 (161-249)||(10340936-10341024)
chr8 (161-245)||(34108378-34108462)
chr8 (161-249)||(43956819-43956907)
chr8 (161-244)||(14314885-14314968)
chr8 (161-244)||(14318589-14318672)
chr8 (161-244)||(26986963-26987046)
chr8 (173-251)||(25953142-25953220)
chr8 (159-251)||(1781963-1782055)
chr8 (161-245)||(18494150-18494233)
[»] scaffold0223 (2 HSPs)
scaffold0223 (15-100)||(2138-2223)
scaffold0223 (161-244)||(1993-2076)
[»] chr5 (22 HSPs)
chr5 (15-100)||(2022964-2023049)
chr5 (15-100)||(13556424-13556509)
chr5 (10-100)||(35369010-35369100)
chr5 (15-100)||(9877658-9877743)
chr5 (15-100)||(39903845-39903930)
chr5 (15-100)||(39908958-39909043)
chr5 (161-249)||(13556273-13556361)
chr5 (159-249)||(35368870-35368960)
chr5 (15-88)||(9872555-9872628)
chr5 (161-249)||(2023101-2023188)
chr5 (161-244)||(9872398-9872481)
chr5 (161-244)||(9877513-9877596)
chr5 (161-244)||(39909105-39909188)
chr5 (15-100)||(4555653-4555738)
chr5 (161-244)||(39903992-39904075)
chr5 (15-74)||(43378437-43378496)
chr5 (159-251)||(43540749-43540839)
chr5 (166-229)||(4555772-4555835)
chr5 (37-89)||(25184114-25184166)
chr5 (164-251)||(43402100-43402187)
chr5 (50-97)||(43540881-43540928)
chr5 (180-249)||(43379554-43379618)
[»] scaffold0006 (2 HSPs)
scaffold0006 (173-251)||(144229-144307)
scaffold0006 (15-100)||(144096-144183)
[»] scaffold0005 (2 HSPs)
scaffold0005 (164-244)||(173493-173573)
scaffold0005 (15-88)||(173358-173431)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 10186783 - 10186698
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  10186783 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagagtaagagaatgatggagaatta 10186698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 43358755 - 43358838
Alignment:
Q  17 ttttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  43358755 ttttacagatttatggttccagcaattcactcatgcattagagaattgatggataatttagagtaagagaatgagggagaatta 43358838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 44524226 - 44524141
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  44524226 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttaaagtaagagaatgatggagaatta 44524141  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17414740 - 17414655
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  17414740 tattttccagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaatta 17414655  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 35626167 - 35626257
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  35626167 aatagtattttatagatttatggttccaacaattcactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaatta 35626257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 19310826 - 19310909
Alignment:
Q  17 ttttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  19310826 ttttacagatttatggttccagcaattcattcatgcattagagaattgatggatgatttatagtaagagaatgagggagaatta 19310909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 3465473 - 3465558
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  3465473 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 3465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 3468067 - 3468152
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  3468067 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 3468152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 19310958 - 19311047
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttat 248  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||||    
T  19310958 caaattaatgcccaaatgtcaaacatttatagtgcattacatgacccttcacatgagagaaagcacccctttgacttgaatcaatgttat 19311047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 28574297 - 28574382
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  28574297 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 28574382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 28598309 - 28598394
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  28598309 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 28598394  T

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Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 13654468 - 13654546
Alignment:
Q  173 aatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||||  ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  13654468 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 13654546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 1187826 - 1187903
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatga 90  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  1187826 aatattttacagatttatggttctaccaattcactcatgcattaaagaattgatggatgatttagagtaagagaatga 1187903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 10186640 - 10186548
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||| ||||| ||||||    
T  10186640 caaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttgacttgaaccaatgctatggt 10186548  T

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Target: chr1; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 16051330 - 16051422
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||  ||||| |||| ||||||||||||||||| ||||||    
T  16051330 caaattaatgcccaaatgtcaaacatttatagtgcattatatgaccattcacatgagtgaaaacacccttttgacttgaatcaatgatatggt 16051422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 43358890 - 43358978
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||  || | ||||||||||||||||| ||||    
T  43358890 aactaatgcccaaatgccaagcatttatagtgcattataggactcttcacatgagagaaagcactcatttgacttgaatcaatgctatg 43358978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 16051206 - 16051281
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatga 90  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||    
T  16051206 tattttacagatttatggtttcagcaattcactcatgcattagagaattgatggatgatttaaagtaagaaaatga 16051281  T

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Target: chr1; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 21431739 - 21431648
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaata-cccctttgacttgaatcaatgttatggt 251  Q
    |||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||  | |||||||||||| |||||||||||||||    
T  21431739 aactaatgcccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaagcaccccctttgacttaaatcaatgttatggt 21431648  T

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Target: chr1; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 28574444 - 28574527
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||  ||| |||||||||||||    
T  28574444 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 28574527  T

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Target: chr1; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 28598456 - 28598539
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||  ||| |||||||||||||    
T  28598456 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 28598539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 44524092 - 44523998
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcac--atgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||  ||||  ||||| |||| ||||||||||||||||||||||||    
T  44524092 caaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatatgagggaaaacacccatttgacttgaatcaatgttatggt 44523998  T

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Target: chr1; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 3468215 - 3468299
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||  |||| ||||||||||||||    
T  3468215 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacatctttaacttgaatcaatgt 3468299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 13654335 - 13654422
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaattt--agagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||  |||| |||||||||| |||||||||    
T  13654335 tattttacagatttatggtttcagcaattcactcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaatta 13654422  T

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Target: chr1; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 21431865 - 21431791
Alignment:
Q  26 tttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||| ||||||||| |||||||||||||||||||||  ||||||| ||||||||||| |||||||||    
T  21431865 tttatggttccatcaattcactgatgcattagagaattgatggatgatttagattaagagaatgagggagaatta 21431791  T

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Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 1187956 - 1188048
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||||||||| ||| || ||||  || ||||||||||||| ||||||| || ||| ||||||||||||||||| |||||||||||    
T  1187956 caaattaatgcccaaatggcaagcacttattatggattatatgactctacacatgagagtaaacacccctttgacttgaattaatgttatggt 1188048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 29681588 - 29681632
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattag 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  29681588 aatattttacagatttatggttccagcaattcactaatgcattag 29681632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 48366257 - 48366213
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattag 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  48366257 aatattttacagatttatggttccagcaattcactaatgcattag 48366213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 17414620 - 17414566
Alignment:
Q  166 atgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaa 220  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||    
T  17414620 atgcccaaatgccaagcatttatagtgcattatatgaccattcacatgagagaaa 17414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 3701548 - 3701485
Alignment:
Q  168 gcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttg 231  Q
    ||||||||| |||  |||||||||||||||| ||||||||||||||| |||||| |||| ||||    
T  3701548 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 3701485  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 21937712 - 21937803
Alignment:
Q  160 aaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||    
T  21937712 aaactaatgcccaaatgccaaacatttatagtgcgttatatgacccttcacatgagagaaaatacccctttgacttgaatcaatgtgatggt 21937803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 21936889 - 21936799
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||||    
T  21936889 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatagatgatttagagtatgagaatgatggagaatta 21936799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 21936744 - 21936653
Alignment:
Q  160 aaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||||||||||||||||  || |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  21936744 aaactaatgcccaaatgttaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 21936653  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 2887490 - 2887575
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||    
T  2887490 tattttacagatttatgattccagcaattcactcatgcattagagagttgatggatgatttagagtaagagaatgagggagaatta 2887575  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 24509846 - 24509937
Alignment:
Q  160 aaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||||||||||||| ||| |||||||||||||||||||||  |||||||||| |||||| |||| ||||||||||||||||||||||||    
T  24509846 aaactaatgcccaaatgtcaagcatttatagtgcattatatgaaccttcacatgagagaaaacacccatttgacttgaatcaatgttatggt 24509937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 2889212 - 2889297
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||| |||||||||    
T  2889212 tattttacagatttatgattccagcaattcactcatgcattagagagttgatgaatgatttagagtaagagaatgagggagaatta 2889297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 21275773 - 21275858
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  21275773 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 21275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 24509032 - 24508947
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  24509032 tattttacaaatttatgattccaacaattcactcatgcattagagaattgatggatgatttagagtaaaagaatgatggagaatta 24508947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 24508914 - 24508827
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||||||||||||||||||||||| ||| ||| ||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||    
T  24508914 taatgcccaaatgccaaacatttacagtacataatatgacccttctcatgagagaaaacacccctttgacttgaatcaatgttatggt 24508827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 24509703 - 24509788
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  24509703 tattttacaaatttatggttccaacaattcactaatgcattagagaattgatggatgatttaaagtaaaagaatgatggagaatta 24509788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 21275920 - 21276003
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  21275920 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 21276003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 11183370 - 11183285
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||  |||||||||||||||||||  ||||||||    
T  11183370 tattttacaggtttatggtttcagcaatttactcatgcattagagaattgattgatgatttagagtaagagaatgagagagaatta 11183285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 20752322 - 20752237
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||  | ||| |||||||||||| || |||||||    
T  20752322 tattttacagatttatggttccaacaattcactcatgcatcagagaattgatggatgacttatagtaagagaatggtgaagaatta 20752237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 21937568 - 21937655
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||   |||||| ||||||| ||||||| |||||    
T  21937568 aatattatacaaatttatggttccagcaattcactcatgcatttgagaattgatggatgttttagaataagagagtgatggaaaatta 21937655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 20752192 - 20752105
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||| |||||||||  ||||||||||||||| |||||  ||||||||| |||||| || | ||||||||||||||||||||||||    
T  20752192 taatgcctaaatgccaagtatttatagtgcattagatgacctttcacatgagagaaaacactcatttgacttgaatcaatgttatggt 20752105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 30283507 - 30283417
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||||||    
T  30283507 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgaaagaaaacacccctttaacttgaatcaatattatggt 30283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 42780320 - 42780410
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  42780320 aactaatgcccaactgtcaatcatttatagtgcattatatgactcttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 42780410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 716267 - 716352
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  716267 tattttacagatttagggttccagcaattcactcatgcattagagaattgatggatgatttagagtaagagaatgaaggagaatta 716352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 30283650 - 30283560
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||    
T  30283650 aatagtattttacagatttatggttctagcaattcactcatgcattagagaattgattgatgatttagagtaagagaaggatggagaatta 30283560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 14917586 - 14917501
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  14917586 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 14917501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 716402 - 716487
Alignment:
Q  162 actaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgtta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||| | |||||||||||||||||||||||    
T  716402 actaatgcccaaatgccaaacatttatagtgcattatatgacctttcatatgagagaaaacatccctttgacttgaatcaatgtta 716487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17720730 - 17720645
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  17720730 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 17720645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 42780184 - 42780269
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||| || |||||||    
T  42780184 tattttacaaatttatggttccaacaattcactcatgcattagagaattgatggatgatttagagtaagagaatggtgaagaatta 42780269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 45120386 - 45120471
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||| ||||||||| |||||||    
T  45120386 tattttacagatttatggttccagcaattcactcatgcattggagaattgatggatgatttagaataatagaatgatgaagaatta 45120471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 45120534 - 45120618
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| ||||||||||||||    
T  45120534 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgt 45120618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 17720583 - 17720500
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  17720583 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 17720500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 14917439 - 14917356
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| | |  ||| |||||||||||||    
T  14917439 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacagctatttaacttgaatcaatg 14917356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 20892408 - 20892321
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgtt 246  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||||||||| || |||||| || | ||||| |||||||||||||    
T  20892408 caaactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacacgagagaaaacactcatttgatttgaatcaatgtt 20892321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 16284437 - 16284523
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatgga-aaatttagagtaagagaatgatggagaatta 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |  | |||||||||||||||||| |||||||||    
T  16284437 tattttactgatttatggtttcagcaattcactcatgcattagagagttgatgaatgattttagagtaagagaatgagggagaatta 16284523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 16284573 - 16284614
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatat 200  Q
    ||||| ||||||||||| |||| |||||||||||||||||||    
T  16284573 caaacaaatgcccaaataccaagcatttatagtgcattatat 16284614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 29827549 - 29827638
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  29827549 caaactaatgcccaaatgccaagcatttataatgcattatatgact-ttcacatgatagaaaacacccctttgacttgaatcaatgttatg 29827638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5458216 - 5458131
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  5458216 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 5458131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5481692 - 5481607
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  5481692 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 5481607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 6858259 - 6858174
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  6858259 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 6858174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 8458311 - 8458396
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  8458311 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 8458396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 8464750 - 8464835
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  8464750 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 8464835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 20891059 - 20891144
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| |||||||||    
T  20891059 tattttatagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagagtaagcgaatgagggagaatta 20891144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 49784633 - 49784721
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||||    
T  49784633 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacactcatttgacttgaatcaatgttatg 49784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 3187660 - 3187573
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||  ||||||||||||||||||| |||||||||    
T  3187660 aatattttacagatttatggttcgagcaattcactcatgcattaaagaattgatagatgatttagagtaagagaatgagggagaatta 3187573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 33703294 - 33703384
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  33703294 aatagtattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 33703384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 1302449 - 1302364
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  1302449 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 1302364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 4049807 - 4049892
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  4049807 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 4049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 6853156 - 6853071
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  6853156 tattttacagatttatggttccagcaattcactcgtgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 6853071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 10591499 - 10591422
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||    
T  10591499 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatg 10591422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 10673142 - 10673057
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  10673142 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 10673057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 10678257 - 10678172
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  10678257 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 10678172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 31076606 - 31076521
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  31076606 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 31076521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 4049955 - 4050038
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  4049955 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 4050038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 10584915 - 10584832
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  10584915 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 10584832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 4054941 - 4055026
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| ||| |||||| || |||||||    
T  4054941 tattttacagatttatggttccagcaattcactcatgcattaaagaattgatggatgatttagaataatagaatggtgaagaatta 4055026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 31081711 - 31081626
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  31081711 tattttacagatttatggttccaacaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 31081626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 33702804 - 33702719
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  33702804 tattttacatatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 33702719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 8464897 - 8464981
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| ||||||||||||||    
T  8464897 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgt 8464981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 1302301 - 1302218
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  1302301 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 1302218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 4055089 - 4055172
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  4055089 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 4055172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 6853009 - 6852926
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  6853009 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 6852926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 6858112 - 6858029
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  6858112 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaatcacctctttaacttgaatcaatg 6858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 10591352 - 10591269
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  10591352 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 10591269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 10672995 - 10672912
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  10672995 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 10672912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 18024354 - 18024267
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||| |||| | ||||||| ||||||||||||||||||||| |  ||||||||||||||||||| |||||||||    
T  18024354 aatattttacagatttattgttctaacaattcattcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaatta 18024267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 33702656 - 33702573
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  33702656 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 33702573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 10585062 - 10584985
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatg 92  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||||||| ||| |||||||||    
T  10585062 tattttacagatttatggttctagctattcactcatgcattagagaattgatggatgatttagaataatagaatgatg 10584985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 5458068 - 5457984
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||  ||| ||||||||||||||    
T  5458068 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgt 5457984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 5481545 - 5481461
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||  ||| ||||||||||||||    
T  5481545 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgt 5481461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 8458458 - 8458542
Alignment:
Q  161 aactaatgcccaaa-tgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  8458458 aactaatgcccaaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 8458542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 31076459 - 31076376
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  31076459 aactaatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 31076376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 31081564 - 31081481
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  31081564 aactaatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 31081481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 49784494 - 49784581
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||  ||||| ||||| ||||||| || ||||||    
T  49784494 aatattttccagatttatggttccagcaattcactcatgaattagagaattgatagatgatttaaagtaaaagaatgagggggaatta 49784581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 29827429 - 29827509
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||    
T  29827429 tattttacagatttat-----cagcaattcactcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaatta 29827509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 33703447 - 33703506
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaa 220  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  33703447 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 33703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 20891182 - 20891244
Alignment:
Q  169 cccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttg 231  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  20891182 cccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttg 20891244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 10678110 - 10678025
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattata--tgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||| |||||  |||  ||| |||||||||||||    
T  10678110 aactaatgcccaaatgtcaagcatttatagtgcattatatgtgactcttcacatgaaagaaagcacctttttaacttgaatcaatg 10678025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 18024228 - 18024168
Alignment:
Q  170 ccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaataccccttt 230  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||| |||||| ||| ||||    
T  18024228 ccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaaacacctcttt 18024168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 14610364 - 14610449
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| |||||||    
T  14610364 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataagagaatgatgaagaatta 14610449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 12851674 - 12851759
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  12851674 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 12851759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 5440359 - 5440267
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||    
T  5440359 caaattaaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttgacttgaatcaatgttatggt 5440267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 5449369 - 5449277
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||    
T  5449369 caaattaaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttgacttgaatcaatgttatggt 5449277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 12856789 - 12856874
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  12856789 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 12856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26051021 - 26051106
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  26051021 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 26051106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26056134 - 26056219
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  26056134 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 26056219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26060380 - 26060465
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  26060380 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 26060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26065493 - 26065578
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  26065493 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 26065578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 4181462 - 4181374
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgtta 247  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||  ||||||||||||||||||||    
T  4181462 caaattaatgcccaaatgtcaaacatttatagtgcattatatgactcttcatatgagagaaaacaccattttgacttgaatcaatgtta 4181374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 11056620 - 11056710
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||| ||||||||||||||  |||||||    
T  11056620 aatagtattttacagatttatggttccaacaattcactcatgcattaaagaattgatggatgatttaaagtaagagaatgataaagaatta 11056710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 12856936 - 12857019
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  12856936 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 12857019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 35352495 - 35352422
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaat 88  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  35352495 tattttatagatttatggttccagcaattcactcatgcattagagaattgatggatggtttatagtaagagaat 35352422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 26051168 - 26051251
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  26051168 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26051251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 26056281 - 26056364
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  26056281 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26056364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 26060527 - 26060610
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  26060527 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26060610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 26065640 - 26065723
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  26065640 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26065723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 37460047 - 37459960
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||| ||||||| ||||||||| || |||||| ||||||||||||||  ||||||||||||||||||  |||||||||    
T  37460047 aatattttacagatatatggtttcagcaattcgctaatgcatcagagaattgatggatgatttagagtaagagaatgtgggagaatta 37459960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 4181585 - 4181501
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||| | |||||||||| |||||| ||||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||    
T  4181585 tattttacgggtttatggttcgagcaat-cactcatgcattagagaattgatggatgatttagattaagagaatgagggagaatta 4181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5440492 - 5440407
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||| ||  |||||||||||| |||||| |||||||||    
T  5440492 tattttacagatgtatggttccagcaatttactcaagctttagagaattgatcgatgatttagagtaagggaatgagggagaatta 5440407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5449502 - 5449417
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||| ||  |||||||||||| |||||| |||||||||    
T  5449502 tattttacagatgtatggttccagcaatttactcaagctttagagaattgatcgatgatttagagtaagggaatgagggagaatta 5449417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 12851823 - 12851907
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||| |||||  |||  ||| ||||||||||||||    
T  12851823 aactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgt 12851907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 5436736 - 5436692
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattag 57  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  5436736 aatattttacagatttatggttcaagcaattcactaatgcattag 5436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 37459917 - 37459830
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||||||||| |||  ||||||||||||||||||| |  ||||||||| |||||| || | ||||| ||||||  ||||||||||    
T  37459917 taatgcccaaatgtcaagtatttatagtgcattatatgtccattcacatgagagaaaacacgcatttgatttgaattgatgttatggt 37459830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 14610512 - 14610559
Alignment:
Q  197 atatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  14610512 atatgactcttcacatgagagaaagcacctctttgacttgaatcaatg 14610559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 35352380 - 35352296
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttc-acatgatagaaaatacccctttgacttgaatcaa 242  Q
    |||| ||||||||||||| ||| ||| ||| |||||||||||||| |||| | |||| |||||||  | ||||||||||| ||||    
T  35352380 caaattaatgcccaaatgtcaagcatatatggtgcattatatgacccttcaaaatgagagaaaatgtctctttgacttgattcaa 35352296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 18737162 - 18737247
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  18737162 tattttacagatttatggttccagcaattcactcatgaattagagaattgatggatgatttagagtaagagaatgagggagaatta 18737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 18670838 - 18670925
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  18670838 aatattttacagatttatggttccaacaagtcactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaatta 18670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 32429487 - 32429402
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||    
T  32429487 tattttacagatttatggttccaacaattcactcatgcattaaagaattgatggatgatttagagtaagagaatgagggagaatta 32429402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 30019906 - 30019815
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||||| ||||||||||    
T  30019906 caaactaatgcccaaatgccaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttgacttgaatc-atgttatggt 30019815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 32429350 - 32429267
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  32429350 aactaatgcacaaatgccaagcatttatagtgcattatatgactcttcaaatgagagaaaacacccctttgacttgaatcaatg 32429267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 18716484 - 18716574
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||  |||||||||    
T  18716484 aatagtattttacagatttatggttccagcaattcactcttgtattagagaattgatggatgatttagagtaagagaatgggggagaatta 18716574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 34128442 - 34128356
Alignment:
Q  14 atattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||    
T  34128442 atattttacagatttatggtttcaacaattcactcatgcattagaaaattgatggatgatttagagtaagagaatgagggagaatta 34128356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 35096028 - 35096113
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  35096028 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 35096113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 54859361 - 54859278
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaat 98  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| |||||||||| |||||||    
T  54859361 tattttacggatttatggttccagcaattcactcgtgcattagagaattgatggatgatttagagcaagagaatgagggagaat 54859278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 3409662 - 3409577
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||||| ||||    
T  3409662 taatgcccaaatgtcaaatatttatagtgcattatatgacccttcacatgagagaaaacactcctttgacttgaatcaatgctatg 3409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 30020054 - 30019969
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||| || |||||||    
T  30020054 tatttcacatatttatggttccaacaattcactcatgcattagagaattgatggatgatttagagtaagagaatggtgaagaatta 30019969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 35090915 - 35090988
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  35090915 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaat 35090988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 47071408 - 47071493
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||    
T  47071408 tattttacaaatttatggttcaaacaattcactcattcattagagaattgatagataatttagagtaagagaatgagggagaatta 47071493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 54859237 - 54859144
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaata-cccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||||||||  ||| |||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||    
T  54859237 caaattaatgcccaaatatcaagcatttatagtgcattatatgacccttcacatgagagaaaacaccccctttgacttgaatcaatgttatggt 54859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 35091062 - 35091145
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  35091062 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 35091145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 35096175 - 35096258
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  35096175 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 35096258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 3424904 - 3424823
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggaga 96  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||| |||||  ||||||||||||||||||| |||||    
T  3424904 tattttacagatttatgtttccagtaactcactcatgcattagagaattaatggatgatttagagtaagagaatgagggaga 3424823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 34279695 - 34279610
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||   |||||||||||||||| || | |||||||    
T  34279695 tattttacagatttatggtttcaggaattcactcatgcattagagaattgatggttgatttagagtaagagaacgaggaagaatta 34279610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 14643799 - 14643719
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  14643799 taatgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttgacttgaatcaatg 14643719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 18670975 - 18671067
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| |||| |||||||||||| |||||||||| ||||||||||| |||||||||| |||||  |||| ||||||||||||||||| ||||||    
T  18670975 caaattaattcccaaatgccaagcatttatagtccattatatgacccttcacatgagagaaagcacccatttgacttgaatcaatgctatggt 18671067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 34279572 - 34279480
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| |||||| |||||| | | |||||||||||||||||||||| |||||||||| |||||| || | ||||||||||||||||||||||||    
T  34279572 caaattaatgctcaaatgtcgagcatttatagtgcattatatgacccttcacatgagagaaaacactcatttgacttgaatcaatgttatggt 34279480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 14643934 - 14643861
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaat 88  Q
    ||||||| ||||||||||||||||||||||||  || ||||||||||||||||||  |||||||||||||||||    
T  14643934 tattttagagatttatggttccagcaattcacctatacattagagaattgatggatgatttagagtaagagaat 14643861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 34128319 - 34128230
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttat 248  Q
    |||| ||||| ||||||| ||| |||||||||||||||||||||| |||||||| | |||||| || | |||||||||||||||||||||    
T  34128319 caaattaatggccaaatgtcaagcatttatagtgcattatatgacccttcacattagagaaaacactcatttgacttgaatcaatgttat 34128230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 25618359 - 25618276
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||||||||| ||||||||||||||||||||       |||||| |||||| ||| || ||||||||||||||||||||    
T  25618359 caaactaatgcccaaatgccaagcatttatagtgcattatatg-------acatgagagaaaacacctctgtgacttgaatcaatgttatg 25618276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 22118850 - 22118932
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaat--acccctttgacttgaat 239  Q
    |||| ||||||||||||| ||| ||||||||||  |||||||||| |||||||||| |||||||  |||||||||||||||||    
T  22118850 caaattaatgcccaaatgtcaagcatttatagtatattatatgacccttcacatgagagaaaatacacccctttgacttgaat 22118932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 3424764 - 3424698
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaataccccttt 230  Q
    ||||||||||||  |||| ||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  3424764 taatgcccaaatatcaaatatttatagtgcattatatgacccttcacatgagagaaaacaccccttt 3424698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 47071530 - 47071585
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatga 214  Q
    |||| |||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  47071530 caaattaatgcccaaatgttaaacatttatagtacattatatgacccttcacatga 47071585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 34602121 - 34602065
Alignment:
Q  43 tcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatt 99  Q
    |||||||||||| ||| ||||||||||  ||||||||||| ||||||| ||||||||    
T  34602121 tcactcatgcataagaaaattgatggatgatttagagtaaaagaatgagggagaatt 34602065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 10341163 - 10341076
Alignment:
Q  13 aatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||    
T  10341163 aatattttacagatttatgattccagcaattcactcatgcattagagaatttatggatgatttagagtaagagaatgagggagaatta 10341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 34108229 - 34108314
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  34108229 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 34108314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 14315115 - 14315030
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  14315115 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 14315030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 14318819 - 14318734
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  14318819 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 14318734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 18494380 - 18494295
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  18494380 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 18494295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 26982080 - 26981995
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  26982080 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 26981995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 26987193 - 26987108
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  26987193 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 26987108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 18608708 - 18608617
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||    
T  18608708 caaattaatgcctaaatgccaaacatttgtagtgcattatatgac-cttcacatgagagaaaacacccctttaacttgaatcaatgttatggt 18608617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 18885065 - 18885136
Alignment:
Q  16 attttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  18885065 attttacagatttatggttccagcaattcactcatgcattagagaattgattgatgatttagagtaagagaa 18885136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 26981932 - 26981849
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  26981932 aactaatgcccaaatgtcaaacatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26981849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 43957051 - 43956968
Alignment:
Q  17 ttttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| |||||||    
T  43957051 ttttacaaatttatggtttcagcaattcactcatgcattagagaattgatggatgatttagaataagagaatgatgaagaatta 43956968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 18608832 - 18608747
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  18608832 tattttacagatttatcgttccgtcaattaactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaatta 18608747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 25953363 - 25953278
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  25953363 tattgtacatatttatggttcaagcaattcactcatgcattagacaattgatggatgatttagagtatgagaatgatggagaatta 25953278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 10341024 - 10340936
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||  ||| |||||||||||||||||| ||||    
T  10341024 aactaatgcccaaatgccaagcatttatggtgcattatatgactcttcacatgagaaaaagcacctctttgacttgaatcaatgctatg 10340936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 34108378 - 34108462
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| ||||||||||||||    
T  34108378 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgt 34108462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 43956907 - 43956819
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  || | ||||||||||||||||| ||||    
T  43956907 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcactcatttgacttgaatcaatgctatg 43956819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 14314968 - 14314885
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||  ||| |||||||||||||    
T  14314968 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 14314885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 14318672 - 14318589
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||  ||| |||||||||||||    
T  14318672 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 14318589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 26987046 - 26986963
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  26987046 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26986963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 25953220 - 25953142
Alignment:
Q  173 aatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||||| |||| |||||||| ||||||| |||||||    
T  25953220 aatgccaaacatttatagtgcattatatgaccattcacatgagagaaaacacccatttgacttaaatcaattttatggt 25953142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 1781963 - 1782055
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||| ||||||| ||||||||||||||||| |||| |||  ||||||||| |||||||||   ||||||||||||||||||||||||    
T  1781963 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcacatgagagaaaatactattttgacttgaatcaatgttatggt 1782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 18494233 - 18494150
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgt 245  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  | || ||| ||||||||||||||    
T  18494233 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagca-ccttttaacttgaatcaatgt 18494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 2223 - 2138
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| |||||||    
T  2223 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaatta 2138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 2076 - 1993
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  2076 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 1993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 2022964 - 2023049
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||| || |||||||    
T  2022964 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataagagaatggtgaagaatta 2023049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 13556509 - 13556424
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| |||||||    
T  13556509 tattttacatatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataagagaatgatgaagaatta 13556424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 35369100 - 35369010
Alignment:
Q  10 aataatattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||||||||||| | |||||||    
T  35369100 aatagtattttacagatttatggttacaacaattcactcatgcattagagaattgatggatgatttagagtaagagaatgaggaagaatta 35369010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 9877743 - 9877658
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  9877743 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 9877658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 39903845 - 39903930
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  39903845 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 39903930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 39908958 - 39909043
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| || |||||||    
T  39908958 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatta 39909043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 13556361 - 13556273
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||||||||| ||||    
T  13556361 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccatttgacttgaatcaatgctatg 13556273  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 35368960 - 35368870
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||||| || | ||||||||||||||||||||||    
T  35368960 caaattaatgcccaaatgtcaagcatttatagtgcattatatgacttttcacatgagagaaaacactcatttgacttgaatcaatgttatg 35368870  T

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Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 9872628 - 9872555
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  9872628 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaat 9872555  T

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Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 2023101 - 2023188
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||    
T  2023101 aactaatgcccatatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagca-ccctttgacttgaatcaatgttatg 2023188  T

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Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 9872481 - 9872398
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||  ||| |||||||||||||    
T  9872481 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 9872398  T

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Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 9877596 - 9877513
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||  ||| |||||||||||||    
T  9877596 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 9877513  T

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Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 39909105 - 39909188
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||  ||| |||||||||||||    
T  39909105 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 39909188  T

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Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 4555653 - 4555738
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatgatggagaatta 100  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||| |||||  ||||||||||| |||||| || |||||||    
T  4555653 tattttacagatttatggtaccaataattcactcatgcattagagaattaatggatgatttagagtaatagaatggtgaagaatta 4555738  T

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Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 39903992 - 39904075
Alignment:
Q  161 aactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||  ||| |||||||||||||    
T  39903992 aactaatgccaaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 39904075  T

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Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 43378437 - 43378496
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatt 74  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  43378437 tattttacagatttatggttccagcaattcactaatgcattaaagaattgatggagaatt 43378496  T

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Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 43540839 - 43540749
Alignment:
Q  159 caaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||| ||||||||| |||||||  ||||||||||||||||||||| |||||||||  ||| || || | |||||||||| |||||||||||||    
T  43540839 caaattaatgcccagatgccaagtatttatagtgcattatatgacccttcacatg--agagaacactcatttgacttgagtcaatgttatggt 43540749  T

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Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 4555772 - 4555835
Alignment:
Q  166 atgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctt 229  Q
    ||||||||||| ||| ||||||||||||||||||||||| || |||||| |||||| |||||||    
T  4555772 atgcccaaatgtcaagcatttatagtgcattatatgactattaacatgagagaaaacacccctt 4555835  T

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Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25184114 - 25184166
Alignment:
Q  37 agcaattcactcatgcattagagaattgatggaaaatttagagtaagagaatg 89  Q
    ||||||||||| || ||||||||||||||||||  ||||||||||||||||||    
T  25184114 agcaattcactaatacattagagaattgatggatgatttagagtaagagaatg 25184166  T

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Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 43402187 - 43402100
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    |||||||  |||| |||||||||||||||||||||||||  ||||| |||| |||||| | |  ||||| | ||||||||||||||||    
T  43402187 taatgcctcaatgacaaacatttatagtgcattatatgatccttcatatgaaagaaaacatcaatttgattcgaatcaatgttatggt 43402100  T

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Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 43540928 - 43540881
Alignment:
Q  50 tgcattagagaattgatggaaaatttagagtaagagaatgatggagaa 97  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  43540928 tgcattagagaattgatagatgatttagagtaagagaatgatggagaa 43540881  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 43379554 - 43379618
Alignment:
Q  180 aacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatg 249  Q
    |||||||||||||||||||||||| ||||||||     |||| || | ||| ||||||||||||||||||    
T  43379554 aacatttatagtgcattatatgacccttcacat-----aaaacactcattttacttgaatcaatgttatg 43379618  T

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Target: scaffold0006 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 144229 - 144307
Alignment:
Q  173 aatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatgttatggt 251  Q
    ||||||||  ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  144229 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 144307  T

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Target: scaffold0006; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 144096 - 144183
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaattt--agagtaagagaatgatggagaatta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||  |||| |||||||||| |||||||||    
T  144096 tattttacagatttatggtttcagcaattcactcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaatta 144183  T

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Target: scaffold0005 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 173493 - 173573
Alignment:
Q  164 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgatagaaaatacccctttgacttgaatcaatg 244  Q
    |||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  173493 taatgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttgacttgaatcaatg 173573  T

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Target: scaffold0005; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 173358 - 173431
Alignment:
Q  15 tattttacagatttatggttccagcaattcactcatgcattagagaattgatggaaaatttagagtaagagaat 88  Q
    ||||||| ||||||||||||||||||||||||  || ||||||||||||||||||  |||||||||||||||||    
T  173358 tattttagagatttatggttccagcaattcacctatacattagagaattgatggatgatttagagtaagagaat 173431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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