View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6169_high_1 (Length: 824)

Name: NF6169_high_1
Description: NF6169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6169_high_1
NF6169_high_1
[»] chr1 (6 HSPs)
chr1 (434-807)||(14405714-14406087)
chr1 (11-218)||(14406303-14406510)
chr1 (601-807)||(14435304-14435510)
chr1 (273-351)||(14406170-14406248)
chr1 (282-349)||(33977643-33977710)
chr1 (111-153)||(14137327-14137369)
[»] chr8 (2 HSPs)
chr8 (105-157)||(30139695-30139747)
chr8 (175-214)||(26252086-26252125)
[»] chr5 (1 HSPs)
chr5 (281-348)||(5900806-5900873)
[»] chr2 (1 HSPs)
chr2 (305-348)||(3271347-3271390)
[»] chr7 (1 HSPs)
chr7 (103-157)||(41311746-41311799)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 434 - 807
Target Start/End: Complemental strand, 14406087 - 14405714
Alignment:
Q  434 tttccaatgacttcatacaaacacgcctcatgtcatccccgaaagatttcctttggtgtgtcgacaaagtgacaaacattaccttaaaactcacacacta 533  Q
    |||||||| ||||||| ||||||||||||||||||||    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  14406087 tttccaattacttcatccaaacacgcctcatgtcatcaagaaaagatttcctttagtgtgtagacaaagtgacaaacattaccttaaaactcacacacta 14405988  T
Q  534 catttctttgaattgaatagatatagataagatacattagcacataaataaccacaatgttttaaagtaccttcatcaagcactacaccaacattcaatt 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14405987 catttctttgaattgaatagatatagataagatacattagcacataaataaccacaatgttttaaagtaccttcatcaagcactacaccaacattcaatt 14405888  T
Q  634 cttgaaaaacctttgaaagagaaaacttctccgcaccatcatgtccaccaacctcctcatcaggagcaaaaaccaaataaacattcctcttaggctgaaa 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14405887 cttgaaaaacctttgaaagagaaaacttctccgcaccatcatgtccaccaacctcctcatcaggagcaaaaaccaaataaacagtcctcttaggctgaaa 14405788  T
Q  734 accccatcctttaagattcctaacagcttcaagatactgcataccaacacacttcatatcctgtgaccctcttg 807  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14405787 atcccatcctttaagattcctaacagcttcaagatactgcataccaacacacttcatatcctgtgaccctcttg 14405714  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 14406510 - 14406303
Alignment:
Q  11 cacagacagccaattggattgctttactattttaaacttgcacatccttcgttgaagagtgtcacatctgtcaaatgacacctaaaaagctagaaatttg 110  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14406510 cacagacagccaattggattgctttactattttaaaattgcacgtccttcgttgaagagtgtcacatctgtcaaatgacacct-aaaagctagaaatttg 14406412  T
Q  111 aaatttcttccttactctatgcaatgtgaatatcaaattggttcttaac-nnnnnnnnaaaattttgcaagttggtcccaattttttaaaactttcaaac 209  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  14406411 aaatttcttccttactctatacaatgtgaatatcaaattggttcttaactttttttttaaaattttgcaagttggtcccaattttttaaaactttcaaac 14406312  T
Q  210 tgaccccta 218  Q
    | |||||||    
T  14406311 taaccccta 14406303  T

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Target: chr1; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 601 - 807
Target Start/End: Complemental strand, 14435510 - 14435304
Alignment:
Q  601 taccttcatcaagcactacaccaacattcaattcttgaaaaacctttgaaagagaaaacttctccgcaccatcatgtccaccaacctcctcatcaggagc 700  Q
    |||||||||||||||||| |||||||||||| || |||||| |||| ||||| |||||||| || ||||||||||| ||||||| |||||||||||||||    
T  14435510 taccttcatcaagcactataccaacattcaagtcctgaaaatccttcgaaagcgaaaacttttcagcaccatcatgaccaccaatctcctcatcaggagc 14435411  T
Q  701 aaaaaccaaataaacattcctcttaggctgaaaaccccatcctttaagattcctaacagcttcaagatactgcataccaacacacttcatatcctgtgac 800  Q
    |||||||||||||||| ||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |||    
T  14435410 aaaaaccaaataaacagtcctcttaggctgaaaatcccaacttttaagaatcctaacagcttcaagatactgcatactaacacacttcatatcttgggac 14435311  T
Q  801 cctcttg 807  Q
    |||||||    
T  14435310 cctcttg 14435304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 14406248 - 14406170
Alignment:
Q  273 agtacctatttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaataca 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14406248 agtacctatttttcaaatttcaagtatgactcaaaacttttaaaatttataaaggcaacccaaaaatgttaacaataca 14406170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 33977710 - 33977643
Alignment:
Q  282 ttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaata 349  Q
    ||||||| |||||||| |||| || ||| |||||| |||||||||  | |||||||||||||||||||    
T  33977710 ttttcaattttcaagtttgacccataacatttaaattttataaaaatagcccaaaaatgttaacaata 33977643  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 14137369 - 14137327
Alignment:
Q  111 aaatttcttccttactctatgcaatgtgaatatcaaattggtt 153  Q
    |||||||||| ||||||||| |||||||||| |||||||||||    
T  14137369 aaatttcttcattactctatacaatgtgaatctcaaattggtt 14137327  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 30139747 - 30139695
Alignment:
Q  105 aatttgaaatttcttccttactctatgcaatgtgaatatcaaattggttctta 157  Q
    ||||| ||||| |||||||||||||| |||||||||||| |||||||||||||    
T  30139747 aattttaaattgcttccttactctatacaatgtgaatattaaattggttctta 30139695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 26252125 - 26252086
Alignment:
Q  175 tgcaagttggtcccaattttttaaaactttcaaactgacc 214  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  26252125 tgcaagttggtcccaatttttttaaacttccaaactgacc 26252086  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 5900806 - 5900873
Alignment:
Q  281 tttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaat 348  Q
    |||||| ||||||||   |||| |||||||||||||||||||||| | | ||||||||||||||||||    
T  5900806 tttttccaatttcaaaattgacccaaaacttttaaaatttataaatgtagcccaaaaatgttaacaat 5900873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 3271347 - 3271390
Alignment:
Q  305 aaaacttttaaaatttataaaagcaacccaaaaatgttaacaat 348  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  3271347 aaaacttttaaaatttataaaagcaacccaaaaatattcacaat 3271390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 41311746 - 41311799
Alignment:
Q  103 gaaatttgaaatttcttccttactctatgcaatgtgaatatcaaattggttctta 157  Q
    ||||||||||||| |||| |||||| || |||||||||| |||||||||||||||    
T  41311746 gaaatttgaaattccttctttactcaatacaatgtgaat-tcaaattggttctta 41311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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