View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6169_low_4 (Length: 237)

Name: NF6169_low_4
Description: NF6169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6169_low_4
NF6169_low_4
[»] chr6 (16 HSPs)
chr6 (1-222)||(21936416-21936637)
chr6 (1-165)||(21937819-21937983)
chr6 (1-148)||(24508664-24508811)
chr6 (86-216)||(12909533-12909663)
chr6 (86-222)||(12934640-12934776)
chr6 (25-167)||(11183031-11183173)
chr6 (23-168)||(20751922-20752067)
chr6 (25-126)||(21936571-21936672)
chr6 (25-126)||(24508745-24508846)
chr6 (25-126)||(20752023-20752124)
chr6 (25-95)||(21937784-21937854)
chr6 (5-67)||(11183072-11183134)
chr6 (174-222)||(21276120-21276168)
chr6 (25-95)||(21275991-21276061)
chr6 (23-110)||(24509978-24510064)
chr6 (125-174)||(21276091-21276140)
[»] chr5 (24 HSPs)
chr5 (11-216)||(35368637-35368842)
chr5 (25-222)||(43540572-43540768)
chr5 (25-174)||(13556141-13556290)
chr5 (125-222)||(2024362-2024459)
chr5 (25-126)||(2023171-2023272)
chr5 (5-95)||(2023210-2023300)
chr5 (25-110)||(43379601-43379686)
chr5 (5-70)||(43540665-43540730)
chr5 (4-95)||(43379639-43379730)
chr5 (25-115)||(35368797-35368887)
chr5 (174-222)||(9872233-9872281)
chr5 (174-222)||(9877348-9877396)
chr5 (130-174)||(24091825-24091869)
chr5 (175-222)||(39909306-39909353)
chr5 (132-222)||(4555920-4556010)
chr5 (25-95)||(9872340-9872410)
chr5 (25-95)||(9877455-9877525)
chr5 (25-95)||(39909176-39909246)
chr5 (1-70)||(13556186-13556255)
chr5 (5-70)||(35368724-35368789)
chr5 (174-222)||(39904192-39904240)
chr5 (125-174)||(9872261-9872310)
chr5 (125-174)||(9877376-9877425)
chr5 (125-174)||(39904163-39904212)
[»] chr3 (53 HSPs)
chr3 (1-222)||(29827656-29827877)
chr3 (25-130)||(49784704-49784809)
chr3 (25-130)||(29827621-29827726)
chr3 (125-222)||(18023922-18024020)
chr3 (1-95)||(49784739-49784833)
chr3 (25-84)||(20891354-20891413)
chr3 (174-223)||(1302052-1302101)
chr3 (174-222)||(4050155-4050203)
chr3 (174-222)||(4055289-4055337)
chr3 (174-222)||(5481297-5481345)
chr3 (174-222)||(6852761-6852809)
chr3 (174-222)||(6857864-6857912)
chr3 (174-222)||(8465097-8465145)
chr3 (174-222)||(10584667-10584715)
chr3 (174-222)||(10591104-10591152)
chr3 (174-222)||(10672747-10672795)
chr3 (174-222)||(10677860-10677908)
chr3 (174-222)||(20891496-20891544)
chr3 (174-222)||(33702408-33702456)
chr3 (25-84)||(20891281-20891340)
chr3 (176-222)||(269526-269572)
chr3 (25-95)||(1302160-1302230)
chr3 (25-95)||(4050026-4050096)
chr3 (25-95)||(4055160-4055230)
chr3 (25-95)||(10672854-10672924)
chr3 (25-95)||(10677967-10678037)
chr3 (25-95)||(31076318-31076388)
chr3 (25-95)||(31081423-31081493)
chr3 (174-222)||(8458659-8458707)
chr3 (174-222)||(31076209-31076257)
chr3 (174-222)||(31081316-31081364)
chr3 (25-95)||(5481404-5481474)
chr3 (25-95)||(6852868-6852938)
chr3 (25-95)||(6857971-6858041)
chr3 (25-95)||(8458530-8458600)
chr3 (25-95)||(10584774-10584844)
chr3 (25-95)||(10591211-10591281)
chr3 (84-126)||(20891354-20891396)
chr3 (132-174)||(20891474-20891516)
chr3 (25-95)||(33702515-33702585)
chr3 (125-174)||(4050126-4050175)
chr3 (125-174)||(4055260-4055309)
chr3 (125-174)||(5481325-5481374)
chr3 (125-174)||(6852789-6852838)
chr3 (125-174)||(6857892-6857941)
chr3 (125-174)||(8465068-8465117)
chr3 (125-174)||(10584695-10584744)
chr3 (125-174)||(10591132-10591181)
chr3 (125-174)||(10672775-10672824)
chr3 (125-174)||(10677888-10677937)
chr3 (125-222)||(18023330-18023427)
chr3 (125-174)||(49784864-49784913)
chr3 (174-222)||(49784893-49784941)
[»] scaffold0005 (2 HSPs)
scaffold0005 (25-222)||(173561-173758)
scaffold0005 (11-70)||(173606-173665)
[»] chr4 (39 HSPs)
chr4 (25-222)||(14643534-14643731)
chr4 (25-222)||(47071609-47071806)
chr4 (25-222)||(22118925-22119122)
chr4 (25-216)||(30019652-30019833)
chr4 (1-171)||(25618089-25618258)
chr4 (25-166)||(54859022-54859163)
chr4 (4-159)||(34279305-34279461)
chr4 (25-126)||(3409493-3409594)
chr4 (25-130)||(32429174-32429279)
chr4 (25-216)||(34601839-34602024)
chr4 (1-222)||(3409337-3409559)
chr4 (25-130)||(25618188-25618293)
chr4 (125-222)||(18716858-18716954)
chr4 (25-126)||(18671048-18671149)
chr4 (125-222)||(18737531-18737630)
chr4 (1-70)||(47071644-47071713)
chr4 (5-93)||(32429152-32429240)
chr4 (11-70)||(14643627-14643686)
chr4 (23-70)||(22118982-22119029)
chr4 (1-67)||(34279339-34279405)
chr4 (53-126)||(3424257-3424330)
chr4 (25-114)||(18716698-18716787)
chr4 (25-114)||(18737371-18737460)
chr4 (25-126)||(34279398-34279499)
chr4 (1-70)||(54859059-54859128)
chr4 (174-222)||(3424122-3424170)
chr4 (23-95)||(18671105-18671177)
chr4 (11-95)||(18716743-18716827)
chr4 (1-57)||(30019743-30019799)
chr4 (174-222)||(35091262-35091310)
chr4 (25-95)||(35091133-35091203)
chr4 (25-95)||(35096246-35096316)
chr4 (125-174)||(32429070-32429119)
chr4 (11-95)||(18737416-18737500)
chr4 (174-222)||(32429042-32429090)
chr4 (174-222)||(35096375-35096423)
chr4 (115-174)||(34128159-34128218)
chr4 (25-95)||(3424229-3424299)
chr4 (125-174)||(35091233-35091282)
[»] chr1 (36 HSPs)
chr1 (25-222)||(19311031-19311228)
chr1 (25-223)||(13654527-13654725)
chr1 (25-217)||(1188029-1188221)
chr1 (11-217)||(10185893-10186099)
chr1 (5-217)||(10186316-10186528)
chr1 (27-222)||(35653042-35653237)
chr1 (59-222)||(1188218-1188381)
chr1 (25-126)||(10186466-10186567)
chr1 (25-130)||(43358961-43359065)
chr1 (25-174)||(16051403-16051552)
chr1 (125-222)||(17414311-17414408)
chr1 (1-124)||(21431509-21431632)
chr1 (25-126)||(21431566-21431667)
chr1 (84-213)||(44523889-44524017)
chr1 (1-216)||(35626373-35626577)
chr1 (4-70)||(19311069-19311135)
chr1 (1-174)||(43358996-43359169)
chr1 (133-216)||(3696125-3696208)
chr1 (143-222)||(21430785-21430863)
chr1 (174-222)||(28574644-28574692)
chr1 (1-67)||(1188064-1188130)
chr1 (25-95)||(28574515-28574585)
chr1 (25-95)||(28598527-28598597)
chr1 (1-70)||(10185942-10186011)
chr1 (174-222)||(3468415-3468463)
chr1 (62-126)||(10185885-10185949)
chr1 (174-222)||(28598656-28598704)
chr1 (174-222)||(43359149-43359197)
chr1 (25-95)||(3468286-3468356)
chr1 (1-70)||(13654562-13654631)
chr1 (125-174)||(28574615-28574664)
chr1 (125-174)||(28598627-28598676)
chr1 (25-110)||(35626338-35626423)
chr1 (25-70)||(44523972-44524017)
chr1 (25-109)||(3701367-3701451)
chr1 (5-69)||(35653136-35653200)
[»] scaffold0006 (2 HSPs)
scaffold0006 (25-223)||(144288-144486)
scaffold0006 (1-70)||(144323-144392)
[»] chr2 (19 HSPs)
chr2 (25-222)||(42780391-42780588)
chr2 (1-168)||(716507-716674)
chr2 (123-217)||(20892111-20892205)
chr2 (11-105)||(20892197-20892291)
chr2 (25-126)||(716472-716573)
chr2 (174-222)||(14917191-14917239)
chr2 (174-222)||(17720008-17720056)
chr2 (174-222)||(45120734-45120782)
chr2 (25-95)||(14917298-14917368)
chr2 (174-222)||(17720335-17720383)
chr2 (174-222)||(30283259-30283307)
chr2 (174-222)||(39178946-39178994)
chr2 (42-129)||(20892232-20892319)
chr2 (1-56)||(42780426-42780481)
chr2 (25-95)||(17720442-17720512)
chr2 (25-95)||(30283366-30283436)
chr2 (25-95)||(45120605-45120675)
chr2 (125-174)||(14917219-14917268)
chr2 (125-174)||(17720363-17720412)
[»] chr8 (26 HSPs)
chr8 (25-222)||(18608440-18608636)
chr8 (25-172)||(43956689-43956836)
chr8 (75-216)||(1782083-1782223)
chr8 (11-114)||(25953012-25953115)
chr8 (125-215)||(10340713-10340803)
chr8 (25-95)||(10340883-10340953)
chr8 (176-222)||(14314720-14314766)
chr8 (174-222)||(14318424-14318472)
chr8 (174-222)||(26981684-26981732)
chr8 (174-222)||(26986798-26986846)
chr8 (174-222)||(34108578-34108626)
chr8 (174-222)||(43956659-43956707)
chr8 (1-68)||(18608534-18608601)
chr8 (25-95)||(14314827-14314897)
chr8 (25-95)||(14318531-14318601)
chr8 (25-95)||(26986905-26986975)
chr8 (174-222)||(18493986-18494034)
chr8 (128-191)||(25952305-25952368)
chr8 (25-95)||(18494093-18494163)
chr8 (25-95)||(26981791-26981861)
chr8 (25-95)||(34108449-34108519)
chr8 (125-174)||(14318452-14318501)
chr8 (125-174)||(18494014-18494063)
chr8 (125-174)||(26981712-26981761)
chr8 (125-174)||(26986826-26986875)
chr8 (125-174)||(34108549-34108598)
[»] chr7 (27 HSPs)
chr7 (101-222)||(37459711-37459832)
chr7 (153-216)||(2248867-2248930)
chr7 (174-222)||(12852023-12852071)
chr7 (174-222)||(12857136-12857184)
chr7 (174-222)||(26051368-26051416)
chr7 (174-222)||(26056481-26056529)
chr7 (174-222)||(26060727-26060775)
chr7 (174-222)||(26065840-26065888)
chr7 (25-67)||(4181347-4181389)
chr7 (25-95)||(12857007-12857077)
chr7 (25-95)||(14610547-14610617)
chr7 (25-95)||(26051239-26051309)
chr7 (25-95)||(26056352-26056422)
chr7 (25-95)||(26060598-26060668)
chr7 (25-95)||(26065711-26065781)
chr7 (25-94)||(5440217-5440286)
chr7 (25-94)||(5449227-5449296)
chr7 (176-222)||(4181284-4181330)
chr7 (25-95)||(12851894-12851964)
chr7 (125-174)||(12857107-12857156)
chr7 (125-174)||(14610647-14610696)
chr7 (125-174)||(26051339-26051388)
chr7 (125-174)||(26056452-26056501)
chr7 (125-174)||(26060698-26060747)
chr7 (125-174)||(26065811-26065860)
chr7 (42-95)||(35352236-35352289)
chr7 (84-144)||(4181329-4181389)
[»] scaffold0223 (2 HSPs)
scaffold0223 (174-222)||(1828-1876)
scaffold0223 (25-95)||(1935-2005)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21936637 - 21936416
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| |||||||| || |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  21936637 ttgccaaaggttatgatcatatacacttgaataaattctaaggttcactaaacacccctttgccaaaggtcatgatcatataaacttgaatcaatgcaaa 21936538  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaa 200  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  21936537 ggttcattaagcacccatttgccaaaggttcaaatgtatataaaagatttccataaagagttacaactcttggtgaagagttacaacttttggttctaaa 21936438  T
Q  201 gtaattccattattttgaaaat 222  Q
    || |||||||||||||| ||||    
T  21936437 gtgattccattattttggaaat 21936416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 21937819 - 21937983
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| |||||||| || ||||||||||||||| ||| ||| | ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  21937819 ttgccaaaggttatgatcatatacacttgaatcaatgataaagttaattaaacaccccttttccaaaggtcatgatcatatacacttgaatcaatgcaaa 21937918  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttaca 165  Q
     ||||||||| ||||| ||||| |||||||||||||||||  ||| ||| |||||||||||||||    
T  21937919 tgttcattaaccacccctttgctaaatgttccaatgtatacgaaatattttcatgaagagttaca 21937983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 24508811 - 24508664
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24508811 ttgccaaaggttatgatcttatacacttgaattaatgctaaggttcattaaacacccctttaccaaaggtcatgatcatatacacttgaatcaatgcaaa 24508712  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagat 148  Q
    |||| ||||||| ||| ||| ||||||||| |||| ||||| ||||||    
T  24508711 ggtttattaagcgcccatttaccaaatgtttcaatatatatgaaagat 24508664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 12909533 - 12909663
Alignment:
Q  86 ttgaatcaattcaaaggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttaca 185  Q
    |||||||||| | |||||||||||| |||| |||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||    
T  12909533 ttgaatcaatgctaaggttcattaaacacctttttgccaaaggttccaatgtatatgaatgattctcatgaaaagttacaactcttggtgaagagttaca 12909632  T
Q  186 acttttgattctaaagtaattccattatttt 216  Q
    ||||||| ||||||||| |||||||||||||    
T  12909633 acttttggttctaaagtgattccattatttt 12909663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 12934640 - 12934776
Alignment:
Q  86 ttgaatcaattcaaaggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttaca 185  Q
    |||||||||| | |||||||||||| |||| |||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||    
T  12934640 ttgaatcaatgctaaggttcattaaacacctttttgccaaaggttccaatgtatatgaatgattctcatgaaaagttacaactcttggtgaagagttaca 12934739  T
Q  186 acttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||| ||||| ||| |||||||||||||| ||||    
T  12934740 acttttggttctagagtgattccattattttggaaat 12934776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 11183173 - 11183031
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||| || || |||||| ||| || ||||||| ||||||| |||||||||||||||||||||||  | ||||||||||||| |||| |||||||    
T  11183173 acttgaatcagtgttatggttcattaaacatccctttgtcaaaggttatgatcatatacacttgaatcaaggctaaggttcattaagtacccctttgcca 11183074  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaac 167  Q
    ||||||||||||||||| |||||||  ||||||||||||||||    
T  11183073 aatgttccaatgtatatgaaagatttccatgaagagttacaac 11183031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 20752067 - 20751922
Alignment:
Q  23 acacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgc 122  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||||| || || ||||||||||||| |||| | |||||| ||||||||||| |||||    
T  20752067 acacttgaatcaatgctaaggttcattaaacacccctttgtcaaaggttataataatatacacttgaaccaatgctaaggtttattaagcacccatttgc 20751968  T
Q  123 caaatgttccaatgtatataaaagattctcatgaagagttacaact 168  Q
     ||| |||  ||||||||| |||| |||||||||||||||||||||    
T  20751967 taaaggttataatgtatatgaaaggttctcatgaagagttacaact 20751922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 21936672 - 21936571
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||| | ||||||||  |||||||||||| |||||||||||||||||||| ||||| |||||||| ||| ||||| |||||||    
T  21936672 acttgaatcaatgttatggtttattaagcacctttttgccaaaggttatgatcatatacacttgaataaattctaaggttcactaaacacccctttgcca 21936573  T
Q  125 aa 126  Q
    ||    
T  21936572 aa 21936571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 24508846 - 24508745
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| ||||||||| |||||||||||| |||||| ||||||||||||| ||| | |||||||||||| ||||| ||| |||    
T  24508846 acttgaatcaatgttatggttcattaagcacccttttgccaaaggttatgatcttatacacttgaattaatgctaaggttcattaaacacccctttacca 24508747  T
Q  125 aa 126  Q
    ||    
T  24508746 aa 24508745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 20752124 - 20752023
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| ||||||||  |||| ||||||| |||  ||||||||||||||||||| | |||||||||||| ||||| |||| ||    
T  20752124 acttgaatcaatgttatggttcattaagcaccattttgtcaaaggttatggccatatacacttgaatcaatgctaaggttcattaaacacccctttgtca 20752025  T
Q  125 aa 126  Q
    ||    
T  20752024 aa 20752023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 21937784 - 21937854
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | |||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  21937784 acttgaatcaatgtgatggttcattaaacacccttttgccaaaggttatgatcatatacacttgaatcaat 21937854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 11183134 - 11183072
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaa 67  Q
    ||||| |||||||| || ||||||||||||| ||||||||||| |||| ||||||||||||||    
T  11183134 caaaggttatgatcatatacacttgaatcaaggctaaggttcattaagtacccctttgccaaa 11183072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 21276120 - 21276168
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  21276120 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 21276168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 21275991 - 21276061
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  21275991 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 21276061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 24509978 - 24510064
Alignment:
Q  23 acacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaa 110  Q
    |||||||||| |||| ||||||||| |||  |||| |||| ||||| ||||||| |||||||||||||| |||   ||||||||||||    
T  24509978 acacttgaattaatgttaaggttcattaat-acccttttgtcaaagatcatgattatatacacttgaattaatgttaaggttcattaa 24510064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 21276091 - 21276140
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  21276091 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 21276140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 35368842 - 35368637
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaa 110  Q
    |||||||| || ||||||||||||||||||||||||| |||||||| ||||| ||||||| || ||||||||||||| ||||||| | ||||||||||||    
T  35368842 ttatgatcatatacacttgaatcaatgctaaggttcattaagcacctctttgtcaaaggttataatcatatacacttaaatcaatgctaaggttcattaa 35368743  T
Q  111 gcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccat 210  Q
    |||| | ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  35368742 gcactcatttgccaaaggttccaatgtatatgaaagattctcataaagagttacaactcttgatgaaaagttacaacttttgattctaaagtgattccat 35368643  T
Q  211 tatttt 216  Q
    | ||||    
T  35368642 tctttt 35368637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 43540768 - 43540572
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||| |||||| || |||||| ||||||||  |||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||| |||||||    
T  43540768 acttgagtcaatgttatggttcattaagcacct-tttgtcaaaggttatgatcatatacacttgaatcaatactaagattcattaagcacccctttgcca 43540670  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || |||||||||||||| ||  |||  ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||| ||||    
T  43540669 aaggttccaatgtatatgaataattaccatgaagagttacaactcttggtgaagagttacaacttttggttctaaattgattcaattattttggaaat 43540572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 13556290 - 13556141
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||||| | |||| ||||||||  |||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||  |||||||    
T  13556290 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaagcacctatttgcca 13556191  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    || |||||||||||||| |||||||| |||||||||||||||||||||||    
T  13556190 aaggttccaatgtatatgaaagattcccatgaagagttacaactcttggt 13556141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 2024362 - 2024459
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||| || | ||| | ||||||||||||||||||||| |||| | |||||||||| ||||||||| |||||||||||||| ||||    
T  2024362 aatgttccaatgtatatgaatggttcccgtgaagagttacaactcttggtcaagattaacaacttttggttctaaagtgattccattattttggaaat 2024459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 2023171 - 2023272
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || | |||| ||| ||||| |||| ||||||| ||||||||||||||||||||||||   | | ||||||||||||||||||||||    
T  2023171 acttgaatcaatgttatgattcattaaacacccatttgtcaaaggttatgatcatatacacttgaatcaatgttatgattcattaagcacccttttgcca 2023270  T
Q  125 aa 126  Q
    ||    
T  2023271 aa 2023272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 2023210 - 2023300
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    ||||| |||||||| || ||||||||||||||| || | |||| ||||||||| |||||||||||| || | |||| ||||||||||||||    
T  2023210 caaaggttatgatcatatacacttgaatcaatgttatgattcattaagcacccttttgccaaaggttataaccatacacacttgaatcaat 2023300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 43379601 - 43379686
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaa 110  Q
    ||||||||||||| || | |||||||||||| | ||| |||||| | |||||||||||||||||||||||| | | ||||||||||    
T  43379601 acttgaatcaatgttatgattcactaagcactcttttaccaaagtttatgatcatatacacttgaatcaatgctacggttcattaa 43379686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 43540730 - 43540665
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||| |||||||| || |||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  43540730 caaaggttatgatcatatacacttgaatcaatactaagattcattaagcacccctttgccaaaggt 43540665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 43379639 - 43379730
Alignment:
Q  4 ccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||| |||||||| || |||||||||||||||||| |||||| ||| || | |||| ||||| || |||||||||||| ||| |||||||    
T  43379639 ccaaagtttatgatcatatacacttgaatcaatgctacggttcattaaacatcactttaccaaaagttatgatcatatacgcttaaatcaat 43379730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 35368887 - 35368797
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacc 115  Q
    ||||||||||||| || | |||| ||| ||||  |||  |||| || |||||||||||||||||||||||| | |||||||||||||||||    
T  35368887 acttgaatcaatgttatgattcattaaacacctttttatcaaatgttatgatcatatacacttgaatcaatgctaaggttcattaagcacc 35368797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 9872281 - 9872233
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  9872281 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 9872233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 9877396 - 9877348
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  9877396 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 9877348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 24091869 - 24091825
Alignment:
Q  130 tccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  24091869 tccaatgtatatgaaagattctcataaagagttacaactcttggt 24091825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 39909306 - 39909353
Alignment:
Q  175 gaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  39909306 gaagagttacaacttttggttctaaagtgattccattattttggaaat 39909353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 4555920 - 4556010
Alignment:
Q  132 caatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||||||| || ||||  | ||||||| || |||| ||| | || ||||||||||||| |||||||||| |||||||||||||| ||||    
T  4555920 caatgtatatgaatgatttccgtgaagaggtataacttttgataaaaagttacaacttttaattctaaagtgattccattattttggaaat 4556010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 9872410 - 9872340
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  9872410 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 9872340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 9877525 - 9877455
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  9877525 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 9877455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 39909176 - 39909246
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  39909176 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 39909246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13556255 - 13556186
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||||| |||| ||| || |||||||||||||||| || ||||| ||||||||  ||||||||||||    
T  13556255 ttgccaaaggttataatcatatacacttgaatcaatgcaaatgttcattaagcacctatttgccaaaggt 13556186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 35368789 - 35368724
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||| |||| ||| || |||||| |||||||||||||||||| ||||||| | ||||||||||||    
T  35368789 caaaggttataatcatatacacttaaatcaatgctaaggttcattaagcactcatttgccaaaggt 35368724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 39904192 - 39904240
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||| ||||    
T  39904192 tgaagagttacaacttttggttctaaagtgattcaattattttggaaat 39904240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 9872310 - 9872261
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  9872310 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 9872261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 9877425 - 9877376
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  9877425 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 9877376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 39904163 - 39904212
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  39904163 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 39904212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29827656 - 29827877
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    |||||||||||||||| | || ||||||||||||||||||||||||| ||||||||  |||| |||| || || ||||||||||||||||||||| ||||    
T  29827656 ttgccaaagattatgaccatacacacttgaatcaatgctaaggttcattaagcaccaatttgtcaaatgttataatcatatacacttgaatcaatgcaaa 29827755  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaa 200  Q
    |||||||||| ||||  ||||||||| |||||||| ||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  29827756 ggttcattaaacacctgtttgccaaaggttccaatctatatgaaagattcccatgcagaattacaactcttggtgaagagttacaacttttgattctaaa 29827855  T
Q  201 gtaattccattattttgaaaat 222  Q
    || |||||||| ||||| ||||    
T  29827856 gtgattccattcttttggaaat 29827877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 49784704 - 49784809
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || | |||| ||||||||| |||||||||| | ||||||||||||||||||||||||   | |||| |||| ||||||||||||||    
T  49784704 acttgaatcaatgttatgattcattaagcacccatttgccaaagcttatgatcatatacacttgaatcaatgatatggtttattatgcacccttttgcca 49784803  T
Q  125 aatgtt 130  Q
    ||||||    
T  49784804 aatgtt 49784809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 29827621 - 29827726
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || | |||| ||||||||  |||||||||| | |||| |||| |||||||||||||| | |||||||||||||||||  |||| ||    
T  29827621 acttgaatcaatgttatgattcattaagcaccattttgccaaagattatgaccatacacacttgaatcaatgctaaggttcattaagcaccaatttgtca 29827720  T
Q  125 aatgtt 130  Q
    ||||||    
T  29827721 aatgtt 29827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 18024020 - 18023922
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaac-tcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||| |  |||||  ||||||||||||||| | |||||||  |||||||||||||| || |||||| |||||||||||||| ||||    
T  18024020 aatgttccaatgtatatgattgattcctatgaagagttacaaccttttggtgattagttacaacttttggttataaagtgattccattattttggaaat 18023922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 49784739 - 49784833
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    ||||||||| |||||||| || ||||||||||||||| || |||| | || |||||| ||||||||| || || | |||||||||||||||||||    
T  49784739 ttgccaaagcttatgatcatatacacttgaatcaatgatatggtttattatgcacccttttgccaaatgttataaccatatacacttgaatcaat 49784833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 20891354 - 20891413
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatataca 84  Q
    |||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||||||    
T  20891354 acttgaatcaatgctatggttcattaagcacccttttgccaaaggttatggtcatataca 20891413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 1302101 - 1302052
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaatt 223  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  1302101 tgaagagttacaacttttggttctaaagtgattccattattttggaaatt 1302052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 4050155 - 4050203
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  4050155 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 4050203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 4055289 - 4055337
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  4055289 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 4055337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 5481345 - 5481297
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  5481345 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 5481297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 6852809 - 6852761
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  6852809 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 6852761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 6857912 - 6857864
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  6857912 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 6857864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 8465097 - 8465145
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  8465097 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 8465145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10584715 - 10584667
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  10584715 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 10584667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10591152 - 10591104
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  10591152 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 10591104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10672795 - 10672747
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  10672795 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 10672747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10677908 - 10677860
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  10677908 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 10677860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 20891496 - 20891544
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  20891496 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 20891544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 33702456 - 33702408
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  33702456 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 33702408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 20891281 - 20891340
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatataca 84  Q
    ||||||||||||| || |||||| |||||| || |||||||||||| |||||||||||||    
T  20891281 acttgaatcaatgatatggttcattaagcaaccatttgccaaaggttatgatcatataca 20891340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 269526 - 269572
Alignment:
Q  176 aagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  269526 aagagctacaacttttgattctaaagtgattccattattttggaaat 269572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 1302230 - 1302160
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  1302230 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 1302160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 4050026 - 4050096
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  4050026 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 4050096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 4055160 - 4055230
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  4055160 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 4055230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 10672924 - 10672854
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  10672924 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 10672854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 10678037 - 10677967
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  10678037 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 10677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 31076388 - 31076318
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  31076388 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 31076318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 31081493 - 31081423
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  31081493 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 31081423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 8458659 - 8458707
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  8458659 tgaagagttacaacttttagttctaaagtgattccattattttggaaat 8458707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 31076257 - 31076209
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  31076257 tgaagagtcacaacttttggttctaaagtgattccattattttggaaat 31076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 31081364 - 31081316
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  31081364 tgaagagtcacaacttttggttctaaagtgattccattattttggaaat 31081316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 5481474 - 5481404
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  5481474 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 5481404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 6852938 - 6852868
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | ||||  |||||||| |||||||||||| || | |||||| ||||||||||||    
T  6852938 acttgaatcaatgccatgattcatcaagcacccttttgccaaaggttataaccatatatacttgaatcaat 6852868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 6858041 - 6857971
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | ||||  |||||||| |||||||||||| || | |||||| ||||||||||||    
T  6858041 acttgaatcaatgccatgattcatcaagcacccttttgccaaaggttataaccatatatacttgaatcaat 6857971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 8458530 - 8458600
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||| ||||| |||||||||||| || | |||||| ||||||||||||    
T  8458530 acttgaatcaatgccatgattcattaaccacccttttgccaaaggttataaccatatatacttgaatcaat 8458600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 10584844 - 10584774
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| | ||||||||||    
T  10584844 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatatttgaatcaat 10584774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 10591281 - 10591211
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| ||| |||||||| || | |||||| ||||||||||||    
T  10591281 acttgaatcaatgccatgattcattaagcacccttttaccaaaggttataaccatatatacttgaatcaat 10591211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 20891354 - 20891396
Alignment:
Q  84 acttgaatcaattcaaaggttcattaagcacccttttgccaaa 126  Q
    |||||||||||| | | ||||||||||||||||||||||||||    
T  20891354 acttgaatcaatgctatggttcattaagcacccttttgccaaa 20891396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 20891474 - 20891516
Alignment:
Q  132 caatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    |||||||||| || ||||||||||||||||||||||| |||||    
T  20891474 caatgtatatgaatgattctcatgaagagttacaacttttggt 20891516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 33702585 - 33702515
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | | |||| ||||||||||||    
T  33702585 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccttatatacttgaatcaat 33702515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 4050126 - 4050175
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  4050126 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 4050175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 4055260 - 4055309
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  4055260 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 4055309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 5481374 - 5481325
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  5481374 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 5481325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 6852838 - 6852789
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  6852838 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 6852789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 6857941 - 6857892
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  6857941 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 6857892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 8465068 - 8465117
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  8465068 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 8465117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10584744 - 10584695
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  10584744 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 10584695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10591181 - 10591132
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  10591181 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 10591132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10672824 - 10672775
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  10672824 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 10672775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10677937 - 10677888
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  10677937 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 10677888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 18023427 - 18023330
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||| ||| ||||| || |||||  ||||| |||| ||| |  |||| |||| ||||||||||  |||||||||| |||||||||||||| ||||    
T  18023427 aatgttctaatatatatgaatgattcctatgaaaagttgcaatttctggtaaagacttacaactttcaattctaaagtgattccattattttggaaat 18023330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 49784864 - 49784913
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || ||||  ||||||||||||||||| |||||    
T  49784864 aatgttccaatgtatatgaatgatttccatgaagagttacaacttttggt 49784913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 49784893 - 49784941
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| || |||||| |||| ||||||||| ||||    
T  49784893 tgaagagttacaacttttggttttaaagtgattctattattttggaaat 49784941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 173561 - 173758
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||| || ||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  173561 acttgaatcaatgctaaggttcattaaacactcctttgtcaaatgttatgatcatatacacttgaatcaatgttaaggttcattaagcacccttttgcca 173660  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || |||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||    
T  173661 aaggttccaatgtatatgaatgattcccatgaatagttacaactcttggtgaagagttacaacttttggttctaaagtgattcaattattttgtaaat 173758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 173606 - 173665
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    |||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  173606 ttatgatcatatacacttgaatcaatgttaaggttcattaagcacccttttgccaaaggt 173665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 14643731 - 14643534
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||| || ||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  14643731 acttgaatcaatgctaaggttcattaaacactcctttgtcaaatgttatgatcatatacacttgaatcaatgttaaggttcattaagcacccttttgcca 14643632  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || |||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||    
T  14643631 aaggttccaatgtatatgaatgattcccatgaatagttacaactcttggtgaagagttacaacttttggttctaaagtgattcaattattttgtaaat 14643534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 47071609 - 47071806
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||| | |||||| |||||| || |||||||||||| ||||||||||||||||||||||||   | |||||||||||||||| |||||||    
T  47071609 acttgaatcaatgcaatggttcattaagcatccatttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacccatttgcca 47071708  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||    
T  47071709 aaggttccaatgtatatgaatgattttcatgaagagttacaactcttggtgaagagttacaacttttggttgtaaagtgattccattattttggaaat 47071806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 22118925 - 22119122
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||| |||  || |||||| |||||||||||||||| |||||   |||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  22118925 acttgaatgaataatatggttcattaagcacccctttgccgaaggttgcgatcatatacacttgaatcaatgctaaggttcattaagcacccatttgcca 22119024  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || ||||||||||| || || |||| ||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  22119025 aaggttccaatgtaaatgaatgattttcaggaagagttgcaactcttgatgaagagttacaacttttggttctaaagtgattccattattttgaaaat 22119122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 30019833 - 30019652
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||| || || |||||| ||||||||  |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||       |    
T  30019833 acttgaatca-tgttatggttcattaagcacctttttgccaaaggttatgatcatacacacttgaatcaatgcaaaggttcattaagcaccc-------a 30019742  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattatttt 216  Q
    || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  30019741 aaggttccaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttacaac--ttgattctaaagtgattccattatttt 30019652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 25618258 - 25618089
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    |||| |||| |||||||| || ||||||||||||||| || |||||| ||||||||| ||||||||| || || | ||||||||||||||||||| ||||    
T  25618258 ttgcgaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacccttttgccaaatgttataaccatatacacttgaatcaatgcaaa 25618159  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactctt 171  Q
     |||||||||| ||||||||| |||| ||| |||||||||| ||||| ||||||||| |||||||||||||    
T  25618158 agttcattaagaacccttttgtcaaaggttacaatgtatatgaaaga-tctcatgaacagttacaactctt 25618089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 54859163 - 54859022
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| |||||| || |||||||||||| ||||||||||||||||||||||||   | | ||||||||||||||||||||||    
T  54859163 acttgaatcaatgttatggttcattaagcatccatttgccaaaggttatgatcatatacacttgaatcaatgttatgtttcattaagcacccttttgcca 54859064  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaa 166  Q
    || |||||||||||||| || |||||  ||||||||||||||    
T  54859063 aaggttccaatgtatatgaatgattccaatgaagagttacaa 54859022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 34279461 - 34279305
Alignment:
Q  4 ccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggt 103  Q
    |||||| |||||||| || |||||| |||||||| ||||||| | ||||||| | |||||||||||| || ||||||||||||||||||||| | |||||    
T  34279461 ccaaaggttatgatcatatacacttaaatcaatgttaaggtttattaagcactcatttgccaaaggttataatcatatacacttgaatcaatgctaaggt 34279362  T
Q  104 tcattaagcacccttttgccaaatg-ttccaatgtatataaaagattctcatgaaga 159  Q
    ||||||||||||| |||| |||| | ||| ||||||||| || ||||| ||||||||    
T  34279361 tcattaagcacccatttgtcaaaagattctaatgtatatgaatgattcccatgaaga 34279305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 3409594 - 3409493
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||   | ||||||||||| ||||||||||||    
T  3409594 acttgaatcaatgctatgattcattaagcacccctttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagtacccttttgcca 3409495  T
Q  125 aa 126  Q
    ||    
T  3409494 aa 3409493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 32429279 - 32429174
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||| | | |||| |||||||||||||| ||||||| ||||||||||||||||||||||||   | | ||||||||||||||||||||||    
T  32429279 acttgaatcaatgccatgattcattaagcacccctttgtcaaaggttatgatcatatacacttgaatcaatgttatgattcattaagcacccttttgcca 32429180  T
Q  125 aatgtt 130  Q
    ||||||    
T  32429179 aatgtt 32429174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 34602024 - 34601839
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||||||  ||||| ||| || || |||| ||||||| ||||||||||| |      |||||   | |||||||||||||||| |||||||    
T  34602024 acttgaatcaatgctatagttcattaaacatccatttgtcaaaggttatgatcatatata------tcaatgttatggttcattaagcacccctttgcca 34601931  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattatttt 216  Q
    ||  ||| ||||||||| || |||||||||||||||||||||||  | ||||| |||||||||||||  ||||||| | |||||||||||||    
T  34601930 aagattcaaatgtatatgaatgattctcatgaagagttacaacttctcgtgaaaagttacaacttttagttctaaaatgattccattatttt 34601839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3409559 - 3409337
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| |||||||| || ||||||||||||||| || |||||| |||| |||| |||||||||||| || |  ||| ||| ||||||||||   |     
T  3409559 ttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagtacccttttgccaaaggttataactatacacatttgaatcaatgtcat 3409460  T
Q  101 ggttcattaagcacccttttgcca-aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaa 199  Q
    |||||||||   | |  |     | ||||||||||||||||| || | ||||||||||||||||||| ||||||| |||||| |||||||||  ||||||    
T  3409459 ggttcattatctatcaataaataataatgttccaatgtatatgaatggttctcatgaagagttacaaatcttggtcaagagtaacaacttttagttctaa 3409360  T
Q  200 agtaattccattattttgaaaat 222  Q
    ||| |||||||||||||| ||||    
T  3409359 agtgattccattattttggaaat 3409337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 25618293 - 25618188
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || | |||| |||||| ||  |||| |||||| ||||||||||||||||||||||||   | ||||||||||||||||||||||||    
T  25618293 acttgaatcaatgttatgattcattaagcatccagttgcgaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacccttttgcca 25618194  T
Q  125 aatgtt 130  Q
    ||||||    
T  25618193 aatgtt 25618188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 18716858 - 18716954
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||| ||||||||||| || | ||| ||||||||||||||||||||||||||||||||| | ||||| ||||||| | |||||||||||||| ||||    
T  18716858 aatgtaccaatgtatatgaatggttcccatgaagagttacaactcttggtgaagagttac-agttttggttctaaactgattccattattttggaaat 18716954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 18671048 - 18671149
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||||| |||||| ||||| | | ||| |||||||| ||  ||||||||||||||||||||   | ||||||||||||||| ||||||||    
T  18671048 acttgaatcaatgctatggttcattaagccctcttttaccaaaggttatcttcatatacacttgaatcaatgttatggttcattaagcaccattttgcca 18671147  T
Q  125 aa 126  Q
    ||    
T  18671148 aa 18671149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 18737531 - 18737630
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtga---agagttacaacttttgattctaaagtaattccattattttgaaaa 221  Q
    ||||| ||||||||||| || | ||| |||||||||||||||||||||||||   |||||||||| ||||| ||||||| | |||||||||||||| |||    
T  18737531 aatgtaccaatgtatatgaatggttcccatgaagagttacaactcttggtgaattagagttacaa-ttttggttctaaactgattccattattttggaaa 18737629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47071644 - 47071713
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||||| |||||||| || ||||||||||||||| || |||||| ||||||||| ||||||||||||    
T  47071644 ttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacccatttgccaaaggt 47071713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 32429240 - 32429152
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatca 93  Q
    ||||| |||||||| || ||||||||||||||| || | |||| ||||||||| ||||||||| || || | |||||||||||||||||    
T  32429240 caaaggttatgatcatatacacttgaatcaatgttatgattcattaagcacccttttgccaaatgttataaccatatacacttgaatca 32429152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 14643686 - 14643627
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    |||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  14643686 ttatgatcatatacacttgaatcaatgttaaggttcattaagcacccttttgccaaaggt 14643627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 22118982 - 22119029
Alignment:
Q  23 acacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  22118982 acacttgaatcaatgctaaggttcattaagcacccatttgccaaaggt 22119029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34279405 - 34279339
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaa 67  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||||| ||||||||| |||| ||||    
T  34279405 ttgccaaaggttataatcatatacacttgaatcaatgctaaggttcattaagcacccatttgtcaaa 34279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 3424330 - 3424257
Alignment:
Q  53 cacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgccaaa 126  Q
    |||||||||| ||||||| ||||||||||  |||| |||||||   | ||||||||||||||||||||||||||    
T  3424330 cacccctttgtcaaaggttatgatcatatcgacttaaatcaatgttatggttcattaagcacccttttgccaaa 3424257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 18716698 - 18716787
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcac 114  Q
    ||||||||||||| || |||||| ||||| | | ||| ||||| || ||||||||||||||||||||||||   | ||||||||||||||    
T  18716698 acttgaatcaatgatatggttcattaagctctcttttaccaaaagttatgatcatatacacttgaatcaatgttatggttcattaagcac 18716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 18737371 - 18737460
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcac 114  Q
    ||||||||||||| || |||||| ||||| | | ||| ||||| || ||||||||||||||||||||||||   | ||||||||||||||    
T  18737371 acttgaatcaatgatatggttcattaagctctcttttaccaaaagttatgatcatatacacttgaatcaatgttatggttcattaagcac 18737460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 34279499 - 34279398
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||| | | | ||||| ||| |||||||| |||||||||||||||| |||||||   |||||| ||||||||| | |||||||    
T  34279499 acttgaatcaatgttatggttaattgaacacccttttaccaaaggttatgatcatatacacttaaatcaatgttaaggtttattaagcactcatttgcca 34279400  T
Q  125 aa 126  Q
    ||    
T  34279399 aa 34279398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 54859128 - 54859059
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||||| |||||||| || ||||||||||||||| || | |||| ||||||||| ||||||||||||    
T  54859128 ttgccaaaggttatgatcatatacacttgaatcaatgttatgtttcattaagcacccttttgccaaaggt 54859059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 3424170 - 3424122
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  3424170 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 3424122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 18671105 - 18671177
Alignment:
Q  23 acacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    ||||||||||||||| || |||||| ||||||||  |||||||||||| || | ||||||||||| |||||||    
T  18671105 acacttgaatcaatgttatggttcattaagcaccattttgccaaaggttataaccatatacacttaaatcaat 18671177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 18716743 - 18716827
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||| || ||||||||||||||| || |||||| |||||||   || ||||||||| || | |||||||||||||||||||    
T  18716743 ttatgatcatatacacttgaatcaatgttatggttcattaagcactatttggccaaaggttataaccatatacacttgaatcaat 18716827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30019799 - 30019743
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcaccc 57  Q
    ||||||||| |||||||| || |||||||||||||||| |||||||| |||||||||    
T  30019799 ttgccaaaggttatgatcatacacacttgaatcaatgcaaaggttcattaagcaccc 30019743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 35091262 - 35091310
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  35091262 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 35091310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 35091133 - 35091203
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  35091133 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 35091203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 35096246 - 35096316
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  35096246 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 35096316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 32429119 - 32429070
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || ||||  |||||||||||||||||||||||    
T  32429119 aatgttccaatgtatatgaatgatttccatgaagagttacaactcttggt 32429070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 18737416 - 18737500
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||| || ||||||||||||||| || |||||| |||||||   || ||||||||| || |  ||||||||||||||||||    
T  18737416 ttatgatcatatacacttgaatcaatgttatggttcattaagcacaatttagccaaaggttataacaatatacacttgaatcaat 18737500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 32429090 - 32429042
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||| ||||    
T  32429090 tgaagagttacaactcttggttctaaagtgattccattattttggaaat 32429042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 35096375 - 35096423
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  35096375 tgaagagttacaactttttgttctaaagtgattccattattttggaaat 35096423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 34128218 - 34128159
Alignment:
Q  115 ccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    |||||||||||| |||||||| ||||| |||||||||||   |||||||||||| |||||    
T  34128218 ccttttgccaaaggttccaatatatatgaaagattctcacagagagttacaacttttggt 34128159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 3424299 - 3424229
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||| |||||||| || |||||| ||||||||| |||||||||||| || | |||| ||| ||||||||||    
T  3424299 acttaaatcaatgttatggttcattaagcacccttttgccaaaggttataaccatacacatttgaatcaat 3424229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 35091233 - 35091282
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  35091233 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 35091282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 19311031 - 19311228
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| ||  ||||| ||||||||| ||| |||||||| |||||||||||||||||||||||| | ||||||||||| |||||| |||||||    
T  19311031 acttgaatcaatgttatagttcattaagcacccttttaccaaaggttatgatcatatacacttgaatcaatgctaaggttcattatgcacccctttgcca 19311130  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||    
T  19311131 aaggttccaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttacaacttttggttataaagtgattccattattttggaaat 19311228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 13654527 - 13654725
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| |||| |||| |||||||| ||| ||||||||| |||||||| ||||| |||| ||||||||||||||  |||||||    
T  13654527 acttgaatcaatgttatggttcattaagtacccttttgccaagggttatgatcatacacacttgagtcaatgcaaaagttcattaagcacctatttgcca 13654626  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaatt 223  Q
    || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  13654627 aaggttccaatgtatatgaaagactctcatgaagagttacaactcttggtgaagagttacaacttttggttctaaagtgattccattattttggaaatt 13654725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 1188029 - 1188221
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||| |||| || |||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||| | |||||||||||| || ||||||||||    
T  1188029 acttgaattaatgttatggttcattaaacacccatttgccaaaggttatgatcatatacacttgtatcaatgctaaggttcattaatcatccttttgcca 1188128  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttg 217  Q
    ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  1188129 aatgttccaatgtatatgaaagattcccatgaatagttacaactcttggtgaaaagttacaacttttggttctaaagtgattccattattttg 1188221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 10185893 - 10186099
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaa 110  Q
    |||||||| || | ||||||||||||| || |||||| ||||||||  |||||||||||| || | ||||||||||||||||||  | ||||||||||||    
T  10185893 ttatgatcatatatacttgaatcaatgatatggttcattaagcacctttttgccaaaggttataaccatatacacttgaatcaacgctaaggttcattaa 10185992  T
Q  111 gcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccat 210  Q
    |||||| ||||| ||| ||| |||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  10185993 gcacccatttgctaaaggtttcaatgtatatgaaagattcccataaagagttacaattcttggtgaagagttacaacttttgattctaaagtgattccat 10186092  T
Q  211 tattttg 217  Q
    |||||||    
T  10186093 tattttg 10186099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 10186528 - 10186316
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggtt 104  Q
    ||||| |||||||| || |||||||||||||||||| |||||| ||||||||| ||||||||| || |  | |||||| |||| |||||||   |||| |    
T  10186528 caaaggttatgatcatatacacttgaatcaatgctatggttcattaagcacccttttgccaaaagttacaaccatataaacttcaatcaatgataaggct 10186429  T
Q  105 cattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaa 204  Q
    |||||||||||| ||||| ||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| |    
T  10186428 cattaagcacccctttgctaaaagtttcaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttaaaacttttgagtctaaagtga 10186329  T
Q  205 ttccattattttg 217  Q
    |||||||||||||    
T  10186328 ttccattattttg 10186316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 35653237 - 35653042
Alignment:
Q  27 ttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgccaaa 126  Q
    ||||||||||| || |||||| ||||||| |||||| ||||||| ||||||||||||||||||||| || | || |||| |||||||||| ||| |||||    
T  35653237 ttgaatcaatgatatggttcattaagcactcctttgtcaaaggttatgatcatatacacttgaatcgatcctaaagttcgttaagcaccccttttccaaa 35653138  T
Q  127 tgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
     | |||||| ||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||    
T  35653137 ggctccaatatatatgaatgattcccatgaagtgttacaactcttggtgaagagttacaacttttggttccaaagtgattccattattttggaaat 35653042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 1188218 - 1188381
Alignment:
Q  59 tttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaag 158  Q
    |||||||||||| ||||| ||||||||||| ||||||   ||| ||||||||||| |||||||||||||||||||||  |||  ||||||||  |||| |    
T  1188218 tttgccaaaggttatgataatatacacttgtatcaatgttaagattcattaagcatccttttgccaaatgttccaattcatacgaaagattcctatgacg 1188317  T
Q  159 agttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| ||||    
T  1188318 agttacaactcttggtgaaaagttacaatttttggttctaaagtgattccattattttggaaat 1188381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 10186567 - 10186466
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||| |||||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  10186567 acttgaaccaatgctatggttcattaagcacccctttgtcaaaggttatgatcatatacacttgaatcaatgctatggttcattaagcacccttttgcca 10186468  T
Q  125 aa 126  Q
    ||    
T  10186467 aa 10186466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 43358961 - 43359065
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||   | |||||||| |||||||||||||||    
T  43358961 acttgaatcaatgctatgattcattaagcacccctttgccaaaggttatgatcatatacacttgaatcaatgttatggttcatt-agcacccttttgcca 43359059  T
Q  125 aatgtt 130  Q
    ||||||    
T  43359060 aatgtt 43359065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 16051403 - 16051552
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| ||||||| | ||||||||| || |||||||||||||||||||||||| | | ||||||||||| | || ||| |||    
T  16051403 acttgaatcaatgatatggttcattaagcactcatttgccaaatgttatgatcatatacacttgaatcaatgctatggttcattaagtatccatttacca 16051502  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||  ||||||||| || ||||| ||| |||||||| |||| |||||    
T  16051503 aatgttataatgtatatgaatgattcccataaagagttataacttttggt 16051552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 17414408 - 17414311
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||| ||||||||| || |||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  17414408 aatgttctaatgtatatgaatgattctaatgaagagttacaacttttggtgaagagttacaagttttggttctaaagtgattccattattttggaaat 17414311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 21431632 - 21431509
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| |||||||| || ||||||||||||||| |||||||||  |||||||| |||||||||||| || || |||||||||||||||||| ||||    
T  21431632 ttgccaaaggttatgatcatacacacttgaatcaatgttaaggttcatcaagcacccatttgccaaaggttataattatatacacttgaatcaatgcaaa 21431533  T
Q  101 ggttcattaagcacccttttgcca 124  Q
      |||||||| ||||  |||||||    
T  21431532 aattcattaaacacctatttgcca 21431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 21431667 - 21431566
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||| |||||||| || |||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||   ||||||||| |||||||| |||||||    
T  21431667 acttaaatcaatgttatggttcattaagcacccttttgccaaaggttatgatcatacacacttgaatcaatgttaaggttcatcaagcacccatttgcca 21431568  T
Q  125 aa 126  Q
    ||    
T  21431567 aa 21431566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 44524017 - 44523889
Alignment:
Q  84 acttgaatcaattcaaaggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagtta 183  Q
    ||||||||||||   | |||||||||||||||| |||| |||| |||  ||||||||| || ||||| |||||||||||||||||||| | ||||| |||    
T  44524017 acttgaatcaatgttatggttcattaagcacccctttgacaaaggtttaaatgtatatgaatgattcccatgaagagttacaactcttagcgaagattta 44523918  T
Q  184 caacttttgattctaaagtaattccattat 213  Q
    ||||||||| ||| ||||| ||||||||||    
T  44523917 caacttttggttc-aaagtgattccattat 44523889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 35626373 - 35626577
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||  |||||||  || || |||||||||||||||||||||| |||  |||  |||| ||||||| || ||||||||||||||||||||  || |    
T  35626373 ttgccaaaagttatgattatacactcttgaatcaatgctaaggttcattaaatacct-tttgtcaaaggttataatcatatacacttgaatcaaagcaga 35626471  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaa 200  Q
     |||||||||| |||  |||||||||  ||| ||||||||| ||||||| ||||          ||||||||||  |||||||||| |||||| ||||||    
T  35626472 agttcattaagtacctatttgccaaagattctaatgtatatgaaagattttcat---------aaactcttggtttagagttacaatttttga-tctaaa 35626561  T
Q  201 gtaattccattatttt 216  Q
    || |||||||||||||    
T  35626562 gtgattccattatttt 35626577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 19311069 - 19311135
Alignment:
Q  4 ccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    |||||| |||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||    
T  19311069 ccaaaggttatgatcatatacacttgaatcaatgctaaggttcattatgcacccctttgccaaaggt 19311135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 43358996 - 43359169
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| |||||||| || ||||||||||||||| || |||||| | ||||||| ||||||||| || || | |||||||||||||||||||   |     
T  43358996 ttgccaaaggttatgatcatatacacttgaatcaatgttatggttca-ttagcacccttttgccaaatgttataaccatatacacttgaatcaatatcat 43359094  T
Q  101 ggttcattaagcacccttttgcca-aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    |||||||||   | |  |     | ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  43359095 ggttcattatcaatcaataaataataatgttccaatgtatatgaatgattctcatgaagagttacaactcttggt 43359169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 3696208 - 3696125
Alignment:
Q  133 aatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattatttt 216  Q
    ||||||||| || ||||| |||||| |||| ||||| ||| | ||||||||||||||||||||| ||||| |||||||||||||    
T  3696208 aatgtatatgaatgattcccatgaaaagttgcaacttttgataaagagttacaacttttgattccaaagtgattccattatttt 3696125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 21430863 - 21430785
Alignment:
Q  143 aaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||||||||| |||| ||| |||| ||| |||||||||||||||||||| |||||| | |||| ||||||||||||||    
T  21430863 aaagattctcataaagaattataacttttgatgaagagttacaacttttga-tctaaaatgattctattattttgaaaat 21430785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 28574644 - 28574692
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  28574644 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 28574692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1188064 - 1188130
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaa 67  Q
    ||||||||| |||||||| || ||||||| ||||||||||||||||| ||| || || |||||||||    
T  1188064 ttgccaaaggttatgatcatatacacttgtatcaatgctaaggttcattaatcatccttttgccaaa 1188130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 28574515 - 28574585
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  28574515 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 28574585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 28598527 - 28598597
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  28598527 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 28598597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10185942 - 10186011
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||||| |||| | | || ||||||||||||| ||||||||||| ||||||||| ||||| ||||||    
T  10185942 ttgccaaaggttataaccatatacacttgaatcaacgctaaggttcattaagcacccatttgctaaaggt 10186011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 3468415 - 3468463
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||| |||||||||||||||||||| | |||||||||||||| ||||    
T  3468415 tgaagaattacaacttttgattctaaaatgattccattattttggaaat 3468463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 10185885 - 10185949
Alignment:
Q  62 gccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgccaaa 126  Q
    ||||| ||| ||||||||||| ||||||||||||   | ||||||||||||||| ||||||||||    
T  10185885 gccaagggttatgatcatatatacttgaatcaatgatatggttcattaagcacctttttgccaaa 10185949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 28598656 - 28598704
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||| | |||||||||||||| ||||    
T  28598656 tgaagagttacaacttttggttctaaattgattccattattttggaaat 28598704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 43359149 - 43359197
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||| ||||    
T  43359149 tgaagagttacaactcttggttctaaagtgattccattattttggaaat 43359197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 3468286 - 3468356
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  3468286 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 3468356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13654562 - 13654631
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||| | |||||||| || |||||||| ||||||| || ||||| ||||||||  ||||||||||||    
T  13654562 ttgccaagggttatgatcatacacacttgagtcaatgcaaaagttcattaagcacctatttgccaaaggt 13654631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 28574615 - 28574664
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  28574615 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 28574664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 28598627 - 28598676
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  28598627 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 28598676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 35626338 - 35626423
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaa 110  Q
    ||||| ||||||| || |||||| | | ||||| ||||||||| || ||||| ||| || ||||||||||| | ||||||||||||    
T  35626338 acttgcatcaatgttatggttcatttaacacccttttgccaaaagttatgattatacactcttgaatcaatgctaaggttcattaa 35626423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 44524017 - 44523972
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||||||||| || |||||| |||||||||||||| |||||||    
T  44524017 acttgaatcaatgttatggttcattaagcacccctttgacaaaggt 44523972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 3701451 - 3701367
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcatta 109  Q
    ||||||||||||  || |||||| |||||| |  ||| ||||||||  |||||| |||||||||||||||| | | |||||||||    
T  3701451 acttgaatcaatattatggttcattaagcatcaatttaccaaaggttgtgatcagatacacttgaatcaatgctatggttcatta 3701367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35653200 - 35653136
Alignment:
Q  5 caaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaagg 69  Q
    ||||| |||||||| || ||||||||||| || |||| ||||  ||||||||||||| |||||||    
T  35653200 caaaggttatgatcatatacacttgaatcgatcctaaagttcgttaagcaccccttttccaaagg 35653136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 144288 - 144486
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| |||| |||| |||||||| ||| ||||||||| |||||||| ||||| |||| ||||||||||||||  |||||||    
T  144288 acttgaatcaatgttatggttcattaagtacccttttgccaagggttatgatcatacacacttgagtcaatgcaaaagttcattaagcacctatttgcca 144387  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaatt 223  Q
    || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  144388 aaggttccaatgtatatgaaagactctcatgaagagttacaactcttggtgaagagttacaacttttggttctaaagtgattccattattttggaaatt 144486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 144323 - 144392
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggt 70  Q
    ||||||| | |||||||| || |||||||| ||||||| || ||||| ||||||||  ||||||||||||    
T  144323 ttgccaagggttatgatcatacacacttgagtcaatgcaaaagttcattaagcacctatttgccaaaggt 144392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 42780391 - 42780588
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| |||||  || |||||||||||| ||||||||||||||||||||||||   | |||||||||||||||  ||||| |    
T  42780391 acttgaatcaatgttatggttcattaagccaccatttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacctatttgcta 42780490  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    || |||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  42780491 aaagttccaatgtatatgaaagattctcatgaagagttacaacttttggtcaagagtaacaacttttggttctaaagtgattccattattttggaaat 42780588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 716507 - 716674
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaa 100  Q
    ||||||||| |||||||| || || ||||||||||||||||| |||| ||||||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  716507 ttgccaaaggttatgatcatacactcttgaatcaatgctaagcttcattaagcacccctttaccaaaggttataatcatatacacttgaatcaatgcaaa 716606  T
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaact 168  Q
    |||| ||||| ||||  ||| || || |||||||||||||| |||||||| ||| |||||||||||||    
T  716607 ggtttattaaacacctatttacctaaggttccaatgtatatgaaagattcacataaagagttacaact 716674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 20892205 - 20892111
Alignment:
Q  123 caaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttg 217  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||| || ||||||||||| || |||||| ||||||||||||||    
T  20892205 caaatgttccaatgtatatgaatggttctcatgaagagttacaactcttggtgaaaagatacaacttttggttttaaagtgattccattattttg 20892111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 20892291 - 20892197
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttc 105  Q
    |||||||| || ||||||||||||||| || |||||| ||| ||| |  |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  20892291 ttatgatcatatacacttgaatcaatgttatggttcattaatcactcacttgccaaatgtcatgatcatatacacttgaatcaatacaaatgttc 20892197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 716472 - 716573
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || ||| || ||| ||||  |||||||||||| ||||||||| || ||||||||||| | ||| |||||||||||||| ||| |||    
T  716472 acttgaatcaatgttacggtccattaaacacctttttgccaaaggttatgatcatacactcttgaatcaatgctaagcttcattaagcacccctttacca 716571  T
Q  125 aa 126  Q
    ||    
T  716572 aa 716573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 14917239 - 14917191
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  14917239 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 14917191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 17720056 - 17720008
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  17720056 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 17720008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 45120734 - 45120782
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  45120734 tgaagagttacaacttttaattctaaagtgattccattattttggaaat 45120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 14917368 - 14917298
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  14917368 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 14917298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 17720383 - 17720335
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||| ||||    
T  17720383 tgaagagttacaacttttggttctaaagtgattctattattttggaaat 17720335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 30283307 - 30283259
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||| | |||||||||||||| ||||    
T  30283307 tgaagagttacaacttttggttctaaaatgattccattattttggaaat 30283259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 39178946 - 39178994
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  39178946 tgaagagttacaacttttagttctaaagtgattccattattttggaaat 39178994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 20892319 - 20892232
Alignment:
Q  42 ggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgccaaatgt 129  Q
    |||||| ||||||||  |||| |||| || ||||||||||||||||||||||||   | |||||||||| ||| |  |||||||||||    
T  20892319 ggttcattaagcacctttttggcaaatgttatgatcatatacacttgaatcaatgttatggttcattaatcactcacttgccaaatgt 20892232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42780426 - 42780481
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacc 56  Q
    ||||||||| |||||||| || ||||||||||||||| || |||||| ||||||||    
T  42780426 ttgccaaaggttatgatcatatacacttgaatcaatgttatggttcattaagcacc 42780481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 17720512 - 17720442
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| |||| |||||||    
T  17720512 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttcaatcaat 17720442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 30283436 - 30283366
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    ||||||||||||  || |||||| ||||||||| |||||||||| | || | |||||| ||||||||||||    
T  30283436 acttgaatcaatattatggttcattaagcacccttttgccaaagattataaccatatatacttgaatcaat 30283366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 45120605 - 45120675
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  45120605 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 45120675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 14917268 - 14917219
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  14917268 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 14917219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 17720412 - 17720363
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  17720412 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 17720363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 18608636 - 18608440
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    ||||||||||||| || |||||| |||||||||||||||||||||| |||| ||||||||||||||||| | | | ||||||| |||||||| |||||||    
T  18608636 acttgaatcaatgttatggttcattaagcacccctttgccaaaggttatgaacatatacacttgaatcactgctatggttcatcaagcacccctttgcca 18608537  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||  | ||||| ||||| || ||||| ||||||||||||||||||||||| |||| | |||||||||  ||||||||| |||||||||||||| ||||    
T  18608536 aagatcccaat-tatatgaatgattcccatgaagagttacaactcttggttaagaatcacaacttttagttctaaagtgattccattattttggaaat 18608440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 43956836 - 43956689
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaagcacccttttgcca 124  Q
    |||||||||||||||| | |||| ||||||||  |||||||||||| || |||||||||| ||||||||||  ||| ||||||||||||||  |||||||    
T  43956836 acttgaatcaatgctatgattcattaagcacctttttgccaaaggttataatcatatacatttgaatcaatgtaaatgttcattaagcacctatttgcca 43956737  T
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttg 172  Q
    ||  ||||||||||||| |||||||  |||||||||||||||||||||    
T  43956736 aagattccaatgtatatgaaagatttccatgaagagttacaactcttg 43956689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 1782083 - 1782223
Alignment:
Q  75 atcatatacacttgaatcaattcaaaggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    |||||||||||||||||||||   | |||||||||| |||   ||||||||| ||||||||  |||| || ||||| | | |||||||||||||||| ||    
T  1782083 atcatatacacttgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gt 1782181  T
Q  175 gaagagttacaacttttgattctaaagtaattccattatttt 216  Q
    ||||||||| |||||||  ||||||| |||||||||||||||    
T  1782182 gaagagttataactttttgttctaaaataattccattatttt 1782223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 25953115 - 25953012
Alignment:
Q  11 ttatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaattcaaaggttcattaa 110  Q
    |||||||| || ||||||||||||||  |||||||||  |||||| |  ||||||||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  25953115 ttatgatcatatacacttgaatcaatattaaggttcatcaagcactcaattgccaaagctcatgataatatacacttgaatcaatgcaagggttcattaa 25953016  T
Q  111 gcac 114  Q
    ||||    
T  25953015 gcac 25953012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 10340803 - 10340713
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattattt 215  Q
    ||||||||||||||||| || | ||  ||||||||||||||||||||||| |||| | |||||||||| ||||||||| ||||||||||||    
T  10340803 aatgttccaatgtatatgaatggtttccatgaagagttacaactcttggtcaagattaacaacttttggttctaaagtgattccattattt 10340713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 10340953 - 10340883
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||||| | |||| ||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  10340953 acttgaatcaatgctatgattcattaagcacccttttgtcaaaggttatgatcatatacacttgaatcaat 10340883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 14314766 - 14314720
Alignment:
Q  176 aagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  14314766 aagagttacaacttttggttctaaagtaattccattattttgaaaat 14314720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 14318472 - 14318424
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  14318472 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 14318424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 26981732 - 26981684
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  26981732 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 26981684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 26986846 - 26986798
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  26986846 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 26986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 34108578 - 34108626
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  34108578 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 34108626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 43956707 - 43956659
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  43956707 tgaagagttacaactcttgattctaaagtgattccattattttaaaaat 43956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18608601 - 18608534
Alignment:
Q  1 ttgccaaagattatgatcttaaacacttgaatcaatgctaaggttcactaagcacccctttgccaaag 68  Q
    ||||||||| |||||| | || |||||||||||| ||||| ||||||  |||||||||||||||||||    
T  18608601 ttgccaaaggttatgaacatatacacttgaatcactgctatggttcatcaagcacccctttgccaaag 18608534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 14314897 - 14314827
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  14314897 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 14314827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 14318601 - 14318531
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  14318601 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 14318531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 26986975 - 26986905
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  26986975 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 26986905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 18494034 - 18493986
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||| | |||||||||||||| ||||    
T  18494034 tgaagagttacaacttttggttctaaattgattccattattttggaaat 18493986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 25952368 - 25952305
Alignment:
Q  128 gttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaactttt 191  Q
    |||||||| ||||| ||||||| | ||||||| ||| || | ||||||||||||||||||||||    
T  25952368 gttccaatatatatgaaagattgtaatgaagaattataattgttggtgaagagttacaactttt 25952305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 18494163 - 18494093
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  18494163 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 18494093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 26981861 - 26981791
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | | |||| ||||||||||||    
T  26981861 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccgtatatacttgaatcaat 26981791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 34108449 - 34108519
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  34108449 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 34108519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 14318501 - 14318452
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  14318501 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 14318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 18494063 - 18494014
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  18494063 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 18494014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 26981761 - 26981712
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  26981761 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 26981712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 26986875 - 26986826
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  26986875 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 26986826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 34108549 - 34108598
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  34108549 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 34108598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 37459832 - 37459711
Alignment:
Q  101 ggttcattaagcacccttttgccaaatgttccaatgtatataaaagattctcatgaagagttacaactcttggtgaagagttacaacttttgattctaaa 200  Q
    |||||||||| ||| | ||||||||| ||| |||||||||| || ||||| ||||||||||| |  || |||||||||||||| ||||||||||| ||||    
T  37459832 ggttcattaaacactcatttgccaaaggttacaatgtatatgaatgattcccatgaagagttcctgcttttggtgaagagttaaaacttttgattttaaa 37459733  T
Q  201 gtaattccattattttgaaaat 222  Q
    || ||||||||||||| |||||    
T  37459732 gtgattccattattttaaaaat 37459711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 2248930 - 2248867
Alignment:
Q  153 atgaagagttacaactcttggtgaagagttacaacttttgattctaaagtaattccattatttt 216  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||    
T  2248930 atgaagagttacaactcttgctgaagagttactacttttggttctaaagtgattccattatttt 2248867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 12852023 - 12852071
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  12852023 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 12852071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 12857136 - 12857184
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  12857136 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 12857184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 26051368 - 26051416
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  26051368 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 26051416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 26056481 - 26056529
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  26056481 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 26056529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 26060727 - 26060775
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  26060727 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 26060775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 26065840 - 26065888
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  26065840 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 26065888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 4181389 - 4181347
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaa 67  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  4181389 acttgaatcaatgttaaggttcattaagcacccctttgccaaa 4181347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 12857007 - 12857077
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  12857007 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 12857077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 14610547 - 14610617
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  14610547 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 14610617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 26051239 - 26051309
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  26051239 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 26051309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 26056352 - 26056422
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  26056352 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 26056422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 26060598 - 26060668
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  26060598 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 26060668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 26065711 - 26065781
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  26065711 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 26065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5440286 - 5440217
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaa 94  Q
    ||||||||||||| || |||||| ||| ||||||||| ||||| || |||| ||||||||||| ||||||    
T  5440286 acttgaatcaatgttatggttcattaatcacccctttcccaaaagttatgaccatatacacttaaatcaa 5440217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5449296 - 5449227
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaa 94  Q
    ||||||||||||| || |||||| ||| ||||||||| ||||| || |||| ||||||||||| ||||||    
T  5449296 acttgaatcaatgttatggttcattaatcacccctttcccaaaagttatgaccatatacacttaaatcaa 5449227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 4181330 - 4181284
Alignment:
Q  176 aagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||| |||||||||||| |||||| |||||||||||||| ||||    
T  4181330 aagagttgcaacttttgattttaaagtgattccattattttggaaat 4181284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 12851894 - 12851964
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||  | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  12851894 acttgaatcaatgtcatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 12851964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 12857107 - 12857156
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  12857107 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 12857156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 14610647 - 14610696
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  14610647 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 14610696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 26051339 - 26051388
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  26051339 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 26051388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 26056452 - 26056501
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  26056452 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 26056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 26060698 - 26060747
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  26060698 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 26060747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 26065811 - 26065860
Alignment:
Q  125 aatgttccaatgtatataaaagattctcatgaagagttacaactcttggt 174  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| |||||    
T  26065811 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 26065860  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 35352289 - 35352236
Alignment:
Q  42 ggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||| ||||||||| |||  ||||||| ||||| ||||||||||||||||||    
T  35352289 ggttcattaagcacccatttatcaaaggttatgattatatacacttgaatcaat 35352236  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 4181389 - 4181329
Alignment:
Q  84 acttgaatcaattcaaaggttcattaagcacccttttgccaaatgttccaatgtatataaa 144  Q
    ||||||||||||   |||||||||||||||||| ||||||||| | | | |||||||||||    
T  4181389 acttgaatcaatgttaaggttcattaagcacccctttgccaaaagattctatgtatataaa 4181329  T

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Target: scaffold0223 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 1876 - 1828
Alignment:
Q  174 tgaagagttacaacttttgattctaaagtaattccattattttgaaaat 222  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  1876 tgaagagatacaacttttggttctaaagtgattccattattttgaaaat 1828  T

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Target: scaffold0223; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 2005 - 1935
Alignment:
Q  25 acttgaatcaatgctaaggttcactaagcacccctttgccaaaggtcatgatcatatacacttgaatcaat 95  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||| || | |||||| ||||||||||||    
T  2005 acttgaatcaatgccatgattcattaagcacccttttgccaaaggttataaccatatatacttgaatcaat 1935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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