View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_high_10 (Length: 350)
Name: NF6170_high_10
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_high_10 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 29465219 - 29465545
Alignment:
| Q |
1 |
gagggaatatagattccagagggatggcttgaacatggagatagagaattagtattactttttctattaattcaannnnnnnnnnnnnaggaaatgggga |
100 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
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| T |
29465219 |
gagggaatatagattctagagggatggcttgaacaaggagatagagaattaatattactttttctattgattcaatttttatttttttaggaaatgggga |
29465318 |
T |
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| Q |
101 |
gcattggtgccacatttttatataatggtctgctcttgattgattatttcctatttcggtcgtannnnnnnagtttatgttgtattttcagttccatggc |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29465319 |
gcattggtgccacatttttgtataatggtctgctcttgattaattatttcctatttcggtcgtatttttttagtttctgttgtattttcagttccatggc |
29465418 |
T |
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| Q |
201 |
taaaagagtgaaatcaagttctttagaagccaggaaccaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaatt |
300 |
Q |
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|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465419 |
taaaagagtgaaatcaagttctttggatgccaggaatcaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaatt |
29465518 |
T |
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| Q |
301 |
ggtaatacatcctatccatatatgtaa |
327 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
29465519 |
ggtaatacatcctaaccatatatgtaa |
29465545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 10009 - 9680
Alignment:
| Q |
1 |
gagggaatatagattccagagggatggcttgaacatggagatagagaattagtattactttttctattaattcaannnnnnnnnnnnnaggaaatgggga |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
10009 |
gagggaatatagattctagagggatggcttgaacatggagatagagaattagtgttactttttctattgattcaatttttatttttttaggaaatgggga |
9910 |
T |
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| Q |
101 |
gcattggtgccacatttttatataatggtctgctcttgattgattatttcctatttcggtcgtannnnnnnagtttatgttgtattttcagttccatggc |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
9909 |
gcattggtgccacatttttgtataatggtctgctcttgattgattattttctgtttcggtcgtatttttt-agtttctgttgtattttcagttccatggc |
9811 |
T |
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| Q |
201 |
taaaagagtgaaatcaagttctttagaagccaggaaccaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaatt |
300 |
Q |
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|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9810 |
taaaagagtgaaatcaagttctttggatgccaggaatcaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgatataaatt |
9711 |
T |
|
| Q |
301 |
ggtaatacatcctatccatatatgtaactca |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9710 |
ggtaatacatcctatccatatatgtaactca |
9680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 2352 - 2672
Alignment:
| Q |
1 |
gagggaatatagattccagagggatggcttgaacatggagatagagaattagtattactttttctattaattcaannnnnnnnnnnnnaggaaatgggga |
100 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
2352 |
gagggaatatagactctagagggatggcttgaacatggagatagagaattagtattactttttctattgattcaatttttatttttttagaaaatgggga |
2451 |
T |
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| Q |
101 |
gcattggtgccacatttttatataatggtctgctcttgattgattatttcctatttcggtcgtannnnnnnagtttatgttgtattttcagttccatggc |
200 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||| | | ||||||||| ||||| |||||| |||||||||||||||| |
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| T |
2452 |
gcattggtgctacatttttgtataatggtctgctcttgattgattatttcttgtctcggtcgtatttttttagtttctgttgttttttcagttccatggc |
2551 |
T |
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| Q |
201 |
taaaagagtgaaatcaagttctttagaagccaggaaccaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaatt |
300 |
Q |
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|||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2552 |
taaaagagtgaaatcaagttctttggatgccaggaatcagccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaatt |
2651 |
T |
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| Q |
301 |
ggtaatacatcctatccatat |
321 |
Q |
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||||||||||||||||||||| |
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| T |
2652 |
ggtaatacatcctatccatat |
2672 |
T |
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