View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6170_high_13 (Length: 303)

Name: NF6170_high_13
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6170_high_13
NF6170_high_13
[»] chr2 (3 HSPs)
chr2 (20-243)||(12958950-12959173)
chr2 (20-243)||(37868290-37868513)
chr2 (20-176)||(10367804-10367960)
[»] chr8 (1 HSPs)
chr8 (20-243)||(29738997-29739220)
[»] chr5 (1 HSPs)
chr5 (20-239)||(5421685-5421894)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 12958950 - 12959173
Alignment:
Q  20 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12958950 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 12959049  T
Q  120 aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta 219  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12959050 aattgattctgaatcagtccttctgttcttttcaaagcgttacctcattaatattatccttaatttcgttcaacccaatttacatattatagtaatatta 12959149  T
Q  220 aaggagacagtaaaaatgtccaac 243  Q
    ||||||||||||||||||||||||    
T  12959150 aaggagacagtaaaaatgtccaac 12959173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 37868290 - 37868513
Alignment:
Q  20 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37868290 gatgactcttgttgttggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 37868389  T
Q  120 aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta 219  Q
    |||||||| | ||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37868390 aattgattatgaatcattccttctgttcttttcaaagcgttacctcattaatattatccttaatttcgttcaacccaatttacatattatagtaatatta 37868489  T
Q  220 aaggagacagtaaaaatgtccaac 243  Q
    ||||||||||||||||||||||||    
T  37868490 aaggagacagtaaaaatgtccaac 37868513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 10367960 - 10367804
Alignment:
Q  20 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10367960 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatctaaatggataaattatgtgtgtttatattatgtttttgtat 10367861  T
Q  120 aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattat 176  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  10367860 aattgattttgaatcagtccttctgttcttttcaaagcgttacctcattaatattat 10367804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 29739220 - 29738997
Alignment:
Q  20 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739220 gatgactcttgttgttggaaacaactcgaatagctattcttcttcaatttacggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 29739121  T
Q  120 aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta 219  Q
    |||||||| | ||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  29739120 aattgattttgaatcagtccttctgttcttttcaaagtgttacctcattaatattatccttaatttcgttcaacccaatttatatattatggtaatatta 29739021  T
Q  220 aaggagacagtaaaaatgtccaac 243  Q
    |||||||| |||||||||||||||    
T  29739020 aaggagacggtaaaaatgtccaac 29738997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 5421685 - 5421894
Alignment:
Q  20 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  5421685 gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaatta--tgtgtttatattatgtttttgtat 5421782  T
Q  120 aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta 219  Q
    | |||||||| ||| | || ||||||||||||||||| |||        |||||||| |||||| | |||| ||||||||||||||||||||||||||||    
T  5421783 agttgattctgaatcaatcattctgttcttttcaaagtgtt--------aatattatccttaatcttgttcgacccaatttacatattatagtaatatta 5421874  T
Q  220 aaggagacagtaaaaatgtc 239  Q
    ||||||||||||||||||||    
T  5421875 aaggagacagtaaaaatgtc 5421894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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