View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_high_14 (Length: 275)
Name: NF6170_high_14
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 3663805 - 3664043
Alignment:
| Q |
18 |
atgaagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgtctcaatttctctttaactttcaaattttagaa |
117 |
Q |
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| T |
3663805 |
atgaagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgccttgatttctctttaactttcaaattttagaa |
3663904 |
T |
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| Q |
118 |
ttaatgctctccaaattgtgtcacgatttgttcctttctcgccacaaaataaagcaaatatgacattgtcaaattttcctcaaaatcgtgacaagatgta |
217 |
Q |
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| T |
3663905 |
ttaatgctctccaaattgtgtcatgatttgttcctttctcgccacaaaataaagcaaat-tgacattgtcaaattttcctcaaaatcgtggcaagatgta |
3664003 |
T |
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| Q |
218 |
ccatttttgtggcacgatttttagttttgcttgattcttg |
257 |
Q |
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| T |
3664004 |
ccatttttgtggcacgatttttagttttgcttgattcttg |
3664043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 5820163 - 5819928
Alignment:
| Q |
21 |
aagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgtctcaatttctctttaactttcaaattttagaatta |
120 |
Q |
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||||||| |||||| ||||||| ||| |||||| |||||| | |||| ||||| ||||| ||||| | ||||||| | || |||||||||| ||| || |
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| T |
5820163 |
aagttgggtttttatggatctcaatatgtaacgttaaaatcgtctcccgatttgataaattgtgtccctatttctcatcaaatttcaaatttcagatttg |
5820064 |
T |
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| Q |
121 |
atgctctccaaattgtgtcacgatttgttcctttctcgccacaaaataaagcaaatatgacattgtcaaattttcctcaaaatcgtgacaagatgtacca |
220 |
Q |
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| T |
5820063 |
acgctcttcgattcgtgtcatgattttctcttttcggaccacaaaataatgtgaat-tgaaaagctccatttttccttagaattgtgacacgatgtagca |
5819965 |
T |
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| Q |
221 |
tttttgtggcacgatttttagttttgcttgattcttg |
257 |
Q |
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| T |
5819964 |
tttttgtggcataatttttagtctttcttgattcttg |
5819928 |
T |
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