View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_high_17 (Length: 252)
Name: NF6170_high_17
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 44150795 - 44150960
Alignment:
| Q |
1 |
ctgagagccaaatttcagtattatgatactttaaaatgccatataataagaaagggtccactatgccatcaattgcctctccttagggaagaacacgggg |
100 |
Q |
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| T |
44150795 |
ctgagagccaaatttcagtattatgatactttaaaatgccatataataagaaagggtccactatgccatcaattgcctctccttagggaa---------- |
44150884 |
T |
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| Q |
101 |
atgagacttttgagttatgcttgccccttattatacaatggcagactattgtaggggcaatccctttctccatttgctttgaattatcggtaacat |
196 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44150885 |
--gagacttttgagttatgcttgcccct------------------tattgtaggggcaatccctttctccatttgctttgaattatcggtaacat |
44150960 |
T |
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