View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6170_high_2 (Length: 550)

Name: NF6170_high_2
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6170_high_2
NF6170_high_2
[»] chr4 (23 HSPs)
chr4 (21-538)||(3956490-3957007)
chr4 (22-349)||(3985768-3986104)
chr4 (52-351)||(3808799-3809098)
chr4 (41-343)||(3933991-3934294)
chr4 (130-351)||(3816375-3816596)
chr4 (361-519)||(3985574-3985732)
chr4 (25-310)||(4001113-4001398)
chr4 (130-295)||(4024022-4024187)
chr4 (41-343)||(3920770-3921073)
chr4 (25-316)||(4008814-4009114)
chr4 (118-336)||(4217412-4217630)
chr4 (25-235)||(3800482-3800692)
chr4 (365-538)||(4023754-4023927)
chr4 (361-514)||(3816187-3816340)
chr4 (361-465)||(3800291-3800395)
chr4 (361-529)||(4217199-4217367)
chr4 (361-514)||(3808613-3808766)
chr4 (361-538)||(3921300-3921477)
chr4 (25-108)||(4024254-4024337)
chr4 (365-538)||(4000838-4001011)
chr4 (364-466)||(4008647-4008749)
chr4 (412-461)||(3934570-3934619)
chr4 (48-104)||(4217653-4217709)
[»] chr5 (2 HSPs)
chr5 (25-347)||(13396744-13397066)
chr5 (362-538)||(13396524-13396704)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 21 - 538
Target Start/End: Original strand, 3956490 - 3957007
Alignment:
Q  21 agtctagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtt 120  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3956490 agtctagacttgtcagcaagtaggaaactgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtt 3956589  T
Q  121 tggatcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgc 220  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3956590 tggatcgtattcctgaagggattcaatcttttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctcagagaagttttctgc 3956689  T
Q  221 agagaaacttgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatttacct 320  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3956690 agagaatcttgttatattggacctgtcaggtagcctactggaaaaactttggtgtggagtgcagataattgaatacgtgtcttctagattaaatttacct 3956789  T
Q  321 taaatcaaagaattataaattaattacgtaannnnnnnnngtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggt 420  Q
    |||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3956790 taaatcaaagaattataaattaattatgtaatttttttttgtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggt 3956889  T
Q  421 gataccagacttttcaaaagccacaaatcttaatgtattgaatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaa 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3956890 gataccagacttttcaaaagccacaaatcttaatgtattgaatatccaaggttgttatgggttgacaagcatccatccgtctattttctctcttgacaaa 3956989  T
Q  521 cttgtgaaattggaccta 538  Q
    ||| ||||||||||||||    
T  3956990 cttttgaaattggaccta 3957007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 349
Target Start/End: Complemental strand, 3986104 - 3985768
Alignment:
Q  22 gtctagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtg------acataga 115  Q
    ||||| |||||||||||| |||||| ||||||||||||||  ||||||||| ||||||||| |||||| | ||||||||||||  ||      |||   |    
T  3986104 gtctaaacttgtcagcaattaggaagctgaagttaagccctgatgtatttgctaagatgacgaacctgaaatttttggatttttatggtgggtacaatca 3986005  T
Q  116 tg---gtttggatcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaag 212  Q
    ||   ||||||||| | ||||| ||||| |||||  ||||||||||||||||| ||||||||||||| ||  |||||||||| | ||| |  |  |||||    
T  3986004 tgattgtttggatcttcttcctcaagggcttcaaccttttccaactgatctaagatatcttcattgggtacattaccctctagagtcattgccaaagaag 3985905  T
Q  213 ttttctgcagagaaacttgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaa 312  Q
    |||||||||||||||||||||||||||||||||||   ||||||| | ||||| |||||||||||||| |||||||||||||| ||||||   |||||||    
T  3985904 ttttctgcagagaaacttgttatattggacttgtcgtatagcctagtagaaaagctttggtgtggagtacaggtaattgaatatgtgtctatcagattaa 3985805  T
Q  313 atttaccttaaatcaaagaattataaattaattacgt 349  Q
    ||||| |  || |||| ||||||||||||||||||||    
T  3985804 atttatcaaaattcaaggaattataaattaattacgt 3985768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 52 - 351
Target Start/End: Complemental strand, 3809098 - 3808799
Alignment:
Q  52 agttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttggatcgtattcctgaagggattcaatattt 151  Q
    ||||||||||   ||||||||||||||||||||| || |  |||||| ||||| |||| |||||| ||||  || || ||||| || || |||||| |||    
T  3809098 agttaagccctcgtgtatttgataagatgaccaaacttcgatttttgtattttggtgatatagatagtttcaattgtcttcctcaaaggtttcaatcttt 3808999  T
Q  152 tccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagagaaacttgttatattggacttgtcaggt 251  Q
    ||||||| |||||| ||||||||||||||| | ||  |||||||||||| || | ||||| |||||||||||||| |||||||||||| ||||||  | |    
T  3808998 tccaactaatctaagatatcttcattggatgtattgtcctctaaaatcattcccagagaacttttctgcagagaatcttgttatattgaacttgtatgat 3808899  T
Q  252 agcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaattacgtaa 351  Q
    ||   | ||||||| |||||| |||||||||||||||||| |||||||||||| | |||||||||| ||||| |||  |||||||||| |||||| ||||    
T  3808898 agtaaaatggaaaagctttggcgtggagtgcaggtaattggatacgtgtcttccaaattaaatttatcttaattcagggaattataaaataattatgtaa 3808799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 41 - 343
Target Start/End: Original strand, 3933991 - 3934294
Alignment:
Q  41 taggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcg---tgacatagatgg---tttggatcgtattcct 134  Q
    |||||| || |||||||||||  ||||||||||||||||||||||||| || |||||| ||||| |   |||  | ||||    |||||||| | |||||    
T  3933991 taggaagctaaagttaagccctcatgtatttgataagatgaccaacctccaatttttgaatttttgggttgattttgatgactatttggatctttttcct 3934090  T
Q  135 gaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagagaaacttgtta 234  Q
     ||||| || ||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||| || | |||||||||||||||||||| |||||||    
T  3934091 caagggcttgaatcttttccaactggtcttagatatcttcattgggtatgttaccctctaaaatcattcccagagaagttttctgcagagaatcttgtta 3934190  T
Q  235 tattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatttaccttaaatcaaagaatt 334  Q
    ||||||||||||    ||| | | ||||||| || ||||||||||| |||||||||||||| ||||||     |||||||||| ||||| |||| |||||    
T  3934191 tattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaatt 3934285  T
Q  335 ataaattaa 343  Q
    |||||||||    
T  3934286 ataaattaa 3934294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 130 - 351
Target Start/End: Complemental strand, 3816596 - 3816375
Alignment:
Q  130 ttcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagagaaact 229  Q
    ||||| ||||| |||||| |||||||  || | |||||||||||||||||| ||  | ||||||||||||| || | ||||||||||||||| |||| ||    
T  3816596 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaagttttctgcaaagaatct 3816497  T
Q  230 tgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatttaccttaaatcaaa 329  Q
    |||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||| |||  | ||||| | |||||||||| ||||| ||||     
T  3816496 tgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaattaaatttatcttaattcaag 3816397  T
Q  330 gaattataaattaattacgtaa 351  Q
    |||||||||| |||||| ||||    
T  3816396 gaattataaaataattatgtaa 3816375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 361 - 519
Target Start/End: Complemental strand, 3985732 - 3985574
Alignment:
Q  361 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 460  Q
    ||||||||||||  |||||||||||||||||||||||||   ||||| |  |||||||| | ||||||||||||||||||||| ||||||||| ||||||    
T  3985732 gtagcaggatctaattaatttaaaagaagttacactctctttttcagaagacctgaaggagttaccagacttttcaaaagccataaatcttaaggtattg 3985633  T
Q  461 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaa 519  Q
    ||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  3985632 aatatccaacgttgttatatgttgacaagcgtccatccatctattttctctcttgacaa 3985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 4001398 - 4001113
Alignment:
Q  25 tagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttgga 124  Q
    ||||||||||| ||  |||||| ||||||||||||||  ||||||||| |||||||||||||||||  | |||||||||   ||  | | | | ||||||    
T  4001398 tagacttgtcatcatttaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttcattggtaaatacgatttgga 4001299  T
Q  125 tcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagag 224  Q
     | | ||||| ||||| |||||| ||| ||||||||||||| |||| ||  |||||||  |||||||||||||||| || |  |||||||||||| | ||    
T  4001298 acttcttcctcaagggcttcaatctttcccaactgatctaagatatatttgttggatacattaccctctaaaatcattcccaaagaagttttctggaaag 4001199  T
Q  225 aaacttgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagatt 310  Q
    || ||||||||||||||||| |||  ||| | | ||||||| ||||||||||||||||||||||||||||| ||||| || |||||    
T  4001198 aatcttgttatattggacttttcacatagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatatgtgtcatccagatt 4001113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 4024187 - 4024022
Alignment:
Q  130 ttcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagagaaact 229  Q
    ||||| ||||| |||||| ||||||||||||||||| |||||||  ||||||   |||||||||||||||| || | ||||||||||||||| |||| ||    
T  4024187 ttcctcaagggcttcaatcttttccaactgatctaagatatctttcttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaatct 4024088  T
Q  230 tgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaata 295  Q
    |||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  4024087 tgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaata 4024022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 41 - 343
Target Start/End: Original strand, 3920770 - 3921073
Alignment:
Q  41 taggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtg---acatagatgg---tttggatcgtattcct 134  Q
    |||||| || |||||||||||  ||||||||||||||||||||||||| || |||||||||||| | |   |  | ||||    |||||||| | |||||    
T  3920770 taggaagctaaagttaagccctcatgtatttgataagatgaccaacctccaatttttggatttttggggttattttgatgactatttggatctttttcct 3920869  T
Q  135 gaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagagaaacttgtta 234  Q
     ||||| || ||| ||||||||||| | ||| ||||||||||||||||  |||||||||||||||| |||| |||||||||| ||| ||||| |||||||    
T  3920870 caagggcttgaatcttttccaactggtttaagatatcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatcttgtta 3920969  T
Q  235 tattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatttaccttaaatcaaagaatt 334  Q
    ||||||||||||    | | | | ||||||| || ||||||||||| |||||||||||||| ||||||     |||||||||| ||||| |||| |||||    
T  3920970 tattggacttgtatcttggtcgaatggaaaagctatggtgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaatt 3921064  T
Q  335 ataaattaa 343  Q
    |||||||||    
T  3921065 ataaattaa 3921073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 4009114 - 4008814
Alignment:
Q  25 tagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtg------ac-at--aga 115  Q
    ||||||||||||| |  ||||| ||||||||||||||  ||||||||| |||||||||||||||||  ||||||||||||| ||      || ||  |||    
T  4009114 tagacttgtcagcgatcaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgctatttttggattttcatggtggaaactatcaaga 4009015  T
Q  116 tggtttggatcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttt 215  Q
      ||||||||| | |||||  ||||||||||| ||||||||||||||||| |||| ||  ||||||  ||||||||||||||||| |  |  ||||||||    
T  4009014 atgtttggatctttttcctcgagggattcaatcttttccaactgatctaagatatatttcttggatgagttaccctctaaaatcattgccaaagaagttt 4008915  T
Q  216 tctgcagagaaacttgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatt 315  Q
    ||||| ||||| ||||||||||| |||||||||  ||||| | | ||||| ||||||| ||||||| |||||||||| || || |||||  |||||||||    
T  4008914 tctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaaggtaattgactatgtatcttcctgattaaatt 4008815  T
Q  316 t 316  Q
    |    
T  4008814 t 4008814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 118 - 336
Target Start/End: Complemental strand, 4217630 - 4217412
Alignment:
Q  118 gtttggatcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttc 217  Q
    ||||||||| | |||||  |||| |||||| |||||||| |||||||| |||||||| |||| |||||||||||||||||||| || | ||||| |||||    
T  4217630 gtttggatcttcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccctctaaaatcattcccagagaacttttc 4217531  T
Q  218 tgcagagaaacttgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaattta 317  Q
    ||||||||| |||||||||||| |||||     |||   | ||||||| |||||||||||||| |||||||||||||| |||||||  |||| |||||||    
T  4217530 tgcagagaatcttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatatgtgtctttcagatgaaattta 4217431  T
Q  318 ccttaaatcaaagaattat 336  Q
     ||||| |||| |||||||    
T  4217430 tcttaattcaaggaattat 4217412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 3800692 - 3800482
Alignment:
Q  25 tagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttgga 124  Q
    ||||||||||| ||  |||||| ||||||||||||||  ||||||||| ||||||||||||| |||  | ||||||||||| ||  | | | | ||||||    
T  3800692 tagacttgtcatcatttaggaagctgaagttaagccctcatgtatttgctaagatgaccaacttgcgatatttggattttcatggtaaatacgatttgga 3800593  T
Q  125 tcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagag 224  Q
     | | ||||| ||||| |||||| |||||||| |||||||| |||||||||||||||   |||||||||||||||| || | ||||||||||||||| ||    
T  3800592 acttcttcctcaagggcttcaatcttttccaaatgatctaagatatcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaag 3800493  T
Q  225 aaacttgttat 235  Q
    || ||||||||    
T  3800492 aatcttgttat 3800482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 365 - 538
Target Start/End: Complemental strand, 4023927 - 4023754
Alignment:
Q  365 caggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaata 464  Q
    |||||||| |||||||||||||| |||| ||||||  ||||   ||||||||||| | |||| |||||||||||||| || |||||||| ||||||||||    
T  4023927 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 4023828  T
Q  465 tccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 538  Q
    |   |  |||| ||   |||| |||| |||||||||||||||||||||||||||| |||||| | |||||||||    
T  4023827 tggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttggaccta 4023754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 361 - 514
Target Start/End: Complemental strand, 3816340 - 3816187
Alignment:
Q  361 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 460  Q
    ||||||||||||  |||||||||||||||||| ||||||  |||||   ||  | |||| | ||||||||||||||||||||| ||||||||| |||||     
T  3816340 gtagcaggatctaattaatttaaaagaagttagactctcttattcaatgttattaaaggagttaccagacttttcaaaagccataaatcttaaggtatta 3816241  T
Q  461 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctctt 514  Q
    ||||||  | ||||||||  | ||| |||| |||||||||||||||| ||||||    
T  3816240 aatatctcaagttgttatcagctgaaaagcgtccatccatctattttatctctt 3816187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 3800395 - 3800291
Alignment:
Q  361 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 460  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||| | ||||  |||||||||||||   |||||| |||||||||    
T  3800395 gtagccggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattg 3800296  T
Q  461 aatat 465  Q
     ||||    
T  3800295 catat 3800291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 529
Target Start/End: Complemental strand, 4217367 - 4217199
Alignment:
Q  361 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 460  Q
    ||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| |||||| | ||||  |||||||||||||   |||||| |||||||||    
T  4217367 gtagccggatctagttaatttaaaagaagttaaactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattg 4217268  T
Q  461 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaa 529  Q
     ||||  ||| ||||  |  ||||  |||  |||||||||||||||||| || || ||| |||||||||    
T  4217267 catattgaagattgtcctcagttggaaagtgtccatccatctattttctgtcctggcaagcttgtgaaa 4217199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 361 - 514
Target Start/End: Complemental strand, 3808766 - 3808613
Alignment:
Q  361 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 460  Q
    ||||||||||||  |||||||||||||||||| | || |  |||||  |||| | |||| | |||||||||||||||||||||||||||| || | |||     
T  3808766 gtagcaggatctaattaatttaaaagaagttagattcactaattcaaaattcttaaaggagttaccagacttttcaaaagccacaaatctgaaggcattt 3808667  T
Q  461 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctctt 514  Q
     ||||| ||   ||| | | ||||| |||| |||||||||||||||||||||||    
T  3808666 catatcaaaatctgtaaagagttgataagcgtccatccatctattttctctctt 3808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 538
Target Start/End: Original strand, 3921300 - 3921477
Alignment:
Q  361 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 460  Q
    ||||||| |||| ||||||||||| ||||||||| ||     | || | |||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  3921300 gtagcagaatctagttaatttaaaggaagttacaatcatttgtgcaagcttcctgaaggagttaccagacttttcaaaagccacaaatcttaaagtattg 3921399  T
Q  461 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 538  Q
    | | ||   | |||| ||   |||  |||| ||||||||||||||||  ||||||| || |||||| | |||||||||    
T  3921400 agtgtcactgcttgtgataatttggaaagcgtccatccatctatttttactcttgagaagcttgtgcatttggaccta 3921477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 4024337 - 4024254
Alignment:
Q  25 tagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtg 108  Q
    |||||||||||| ||| || || |||| ||||||| |  ||| ||||| |||||||||||||||||| ||||||||||||||||    
T  4024337 tagacttgtcaggaagaagaaagctgatgttaagctctcatgcatttgctaagatgaccaacctgcaatttttggattttcgtg 4024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 538
Target Start/End: Complemental strand, 4001011 - 4000838
Alignment:
Q  365 caggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaata 464  Q
    |||||||| |||||||||||||| |||| |||| |   |||| | ||||| || |   ||||||||||||||||||| ||||||||||| ||||||||||    
T  4001011 caggatctagttaatttaaaagaggttagactcaccagttcaaggttccttaaagaattaccagacttttcaaaagctacaaatcttaaggtattgaata 4000912  T
Q  465 tccaaggttg-ttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 538  Q
    ||  || |||  |||   |||  |||| |||| ||||||||||||||||| || || |||||| |||||||||||    
T  4000911 tcacagattgcctat-cattggaaagcgtccacccatctattttctctctagaaaagcttgtgcaattggaccta 4000838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 466
Target Start/End: Complemental strand, 4008749 - 4008647
Alignment:
Q  364 gcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaat 463  Q
    ||||||||| ||||||||| ||||| ||| |||||   ||||| ||| | |||||| | | |||||| |||||||||| ||||||||||| |||||||||    
T  4008749 gcaggatctagttaatttacaagaatttagactctttgattcacgatccttgaaggagttgccagacctttcaaaagctacaaatcttaaagtattgaat 4008650  T
Q  464 atc 466  Q
    |||    
T  4008649 atc 4008647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 3934570 - 3934619
Alignment:
Q  412 cctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattga 461  Q
    |||||||| | | ||||||||||||||||||||||||||||| |||||||    
T  3934570 cctgaaggagttgccagacttttcaaaagccacaaatcttaaagtattga 3934619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 4217709 - 4217653
Alignment:
Q  48 ctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggatttt 104  Q
    ||||||||||||||  ||||||||| |||||||||||||||| | |||||| |||||    
T  4217709 ctgaagttaagccctcatgtatttgctaagatgaccaacctgaaatttttgaatttt 4217653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 25 - 347
Target Start/End: Complemental strand, 13397066 - 13396744
Alignment:
Q  25 tagacttgtcagcaagtaggaacctgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttgga 124  Q
    ||||||||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||| | |||||| |||||| ||| ||||| ||||||||    
T  13397066 tagacttgtcagcaattaggaagctgaagttaagcccgcctgtatttgataagatgaccaacctgaaatttttgtattttcatgatatagacggtttgga 13396967  T
Q  125 tcgtattcctgaagggattcaatattttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctctgagaagttttctgcagag 224  Q
    |||| ||||| ||||| |||||| ||||||||||||||||| ||||||| |||||||   |||||||||||||||| || | |||||||||||||  ||     
T  13396966 tcgtcttcctcaagggcttcaattttttccaactgatctaagatatctttattggatgcattaccctctaaaatcattcccagagaagttttctgttgat 13396867  T
Q  225 aaacttgttatattggacttgtcaggtagcctactggaaaaactttggtgtggagtgcaggtaattgaatacgtgtcttctagattaaatttaccttaaa 324  Q
    || ||||||||| ||| |||| ||  ||||||  | ||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||     
T  13396866 aatcttgttatactgggcttgccatatagccttgtagaaaagctttggtgtggagtacaggtaattgaatacgtgtctttcagattaaatttatcttaat 13396767  T
Q  325 tcaaagaattataaattaattac 347  Q
    |||| ||||||||||||||||||    
T  13396766 tcaaggaattataaattaattac 13396744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 362 - 538
Target Start/End: Complemental strand, 13396704 - 13396524
Alignment:
Q  362 tagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattga 461  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||||  || |||||||| | |||||||||||||||| |||||||||||||| |||||||    
T  13396704 tagcaggatctagttaatttaaaacaagttacactctgccattcaaaatacctgaaggagttaccagacttttcaaacgccacaaatcttaaggtattga 13396605  T
Q  462 atatccaaggttgttatgggtt----gacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 538  Q
    ||||   | | ||| || ||||    ||||||| |||||||||| ||||||||||||||||| |||||| | |||||||||    
T  13396604 atatgagatggtgtaataggttgatcgacaagcgtccatccatcaattttctctcttgacaagcttgtgcatttggaccta 13396524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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