View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6170_high_5 (Length: 440)
Name: NF6170_high_5
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 34876483 - 34876060
Alignment:
| Q |
6 |
aatagtaacactcaggattgagataatcttgaaattatttatgttataggcataaaaaacatctaacggaaatcatgcagtaccaacattttcaaattga |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
34876483 |
aatagtatcactcaggattgagataatcttgaaattatttatgttataggcataaaaaacatctaacggaaatcatgcagtaccaacattt-cagattga |
34876385 |
T |
|
| Q |
106 |
aggtgtgtgtgatgtttgtgactgcgtcggtgcttcatagaacacaatttctcgtgcagatattgacttattgtctattcttttagtaatatttctttct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876384 |
aggtgtgtgtgatgtttgtgactgcgtcggtgcttcatagaacacaatttctcgtgcagatattgacttattgtctattcttttagtaatatttctttct |
34876285 |
T |
|
| Q |
206 |
tagttgtcttttccatccaatttaaagctgcaacagcaatggacttagattcataactcattagtaacgctctgaaagtgttgcattctgcaggtggtaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34876284 |
tagttgtcttttccatccaatttaaagctgcaacagcaatggacttagattcataactcattagtaaccctctgaaagtgttgcattctgcaggtggtaa |
34876185 |
T |
|
| Q |
306 |
tgttggtcctggttctaatatttgcgggtgtccacagtggcctggccagcttccgtgacactggtgagaaactcattggtgaacgagcttaccgtgttct |
405 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34876184 |
tgttggtcctggttctcatatttgcgggtgtccacagtggcctggccagcttccgtgacaccggagagaaactcatcggtgaacgagcttaccgtgttct |
34876085 |
T |
|
| Q |
406 |
ttttgcaggcacatcgctacctttg |
430 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34876084 |
ttttgcaggcacatcgctacctttg |
34876060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 430
Target Start/End: Complemental strand, 34868914 - 34868779
Alignment:
| Q |
292 |
tctgcaggtggtaatgttggtcctggttctaatatttgcgggtgtccacagtggcctggccagcttccgtgacactggtgagaaactcattggtgaacga |
391 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||| || || ||| |
|
|
| T |
34868914 |
tctgcaggtggtaatgttt---ctggttctcatatctgcgggtgtccacagcggcctggccagcttccgtgacacctgcgagaaactcatcggagatcga |
34868818 |
T |
|
| Q |
392 |
gcttaccgtgttctttttgcaggcacatcgctacctttg |
430 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
34868817 |
gcttaccgtgttcgttttgcaggaacatcactacctttg |
34868779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 429
Target Start/End: Original strand, 38381128 - 38381262
Alignment:
| Q |
295 |
gcaggtggtaatgttggtcctggttctaatatttgcgggtgtccacagtggcctggccagcttccgtgacactggtgagaaactcattggtgaacgagct |
394 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| | | ||||||||||| |||| ||| | || | || ||||||||| ||||||||||| ||||| |
|
|
| T |
38381128 |
gcaggtggtaatgttgatcctaattctcgtatttgccgttttccacagtggcatggctagcctacggaataccggtgagaaaatcattggtgaaagagct |
38381227 |
T |
|
| Q |
395 |
taccgtgttctttttgcaggcacatcgctaccttt |
429 |
Q |
| |
|
| || ||| |||||||||| | ||| |||||||| |
|
|
| T |
38381228 |
tttcgggttatttttgcagggatatcactaccttt |
38381262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University