View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6170_high_8 (Length: 368)

Name: NF6170_high_8
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6170_high_8
NF6170_high_8
[»] chr1 (19 HSPs)
chr1 (10-351)||(32926226-32926560)
chr1 (42-87)||(48678980-48679025)
chr1 (43-87)||(5485897-5485941)
chr1 (42-80)||(611658-611696)
chr1 (42-84)||(8828152-8828193)
chr1 (42-80)||(26159440-26159478)
chr1 (42-80)||(33125357-33125395)
chr1 (41-79)||(35026889-35026927)
chr1 (42-80)||(43755712-43755750)
chr1 (43-80)||(5771782-5771819)
chr1 (39-80)||(25586551-25586592)
chr1 (40-69)||(45333567-45333596)
chr1 (43-87)||(46543468-46543513)
chr1 (43-80)||(49699786-49699823)
chr1 (41-69)||(19442504-19442532)
chr1 (41-73)||(34254392-34254424)
chr1 (44-80)||(39757181-39757217)
chr1 (44-80)||(39762535-39762571)
chr1 (41-69)||(41677369-41677397)
[»] chr6 (8 HSPs)
chr6 (144-229)||(21418244-21418329)
chr6 (32-69)||(30714669-30714706)
chr6 (37-80)||(2242056-2242099)
chr6 (158-225)||(34441954-34442021)
chr6 (46-80)||(31713345-31713379)
chr6 (42-87)||(32253779-32253824)
chr6 (144-224)||(21388309-21388389)
chr6 (44-80)||(27612876-27612912)
[»] chr5 (17 HSPs)
chr5 (42-80)||(32912037-32912075)
chr5 (144-224)||(20478468-20478548)
chr5 (37-80)||(19982020-19982063)
chr5 (42-73)||(27546062-27546093)
chr5 (41-80)||(38704231-38704270)
chr5 (42-80)||(18511830-18511868)
chr5 (42-80)||(19840020-19840058)
chr5 (42-80)||(33958294-33958332)
chr5 (111-194)||(42509671-42509756)
chr5 (43-80)||(8681843-8681880)
chr5 (39-80)||(25345336-25345377)
chr5 (47-80)||(33901930-33901963)
chr5 (43-80)||(34124621-34124658)
chr5 (41-84)||(189732-189776)
chr5 (41-84)||(17097831-17097875)
chr5 (44-80)||(34400619-34400655)
chr5 (95-154)||(35649950-35650007)
[»] chr4 (19 HSPs)
chr4 (37-87)||(31804356-31804406)
chr4 (42-80)||(39158104-39158142)
chr4 (37-69)||(56474809-56474841)
chr4 (33-76)||(19672411-19672454)
chr4 (41-80)||(50506391-50506430)
chr4 (41-80)||(54801521-54801560)
chr4 (46-80)||(19879776-19879810)
chr4 (42-80)||(20381350-20381388)
chr4 (42-80)||(21392569-21392607)
chr4 (39-77)||(31559534-31559572)
chr4 (42-87)||(44626604-44626650)
chr4 (43-80)||(149519-149556)
chr4 (43-80)||(2738302-2738339)
chr4 (43-80)||(13139148-13139185)
chr4 (43-76)||(30866353-30866386)
chr4 (47-80)||(54921696-54921729)
chr4 (40-80)||(29227277-29227317)
chr4 (43-87)||(35332706-35332750)
chr4 (40-80)||(40308438-40308478)
[»] chr3 (14 HSPs)
chr3 (42-80)||(35755983-35756021)
chr3 (41-80)||(24095440-24095479)
chr3 (41-80)||(42683825-42683864)
chr3 (42-80)||(39901590-39901628)
chr3 (42-80)||(52727482-52727520)
chr3 (38-80)||(53871055-53871097)
chr3 (43-80)||(9753230-9753267)
chr3 (43-84)||(52089970-52090011)
chr3 (41-73)||(10811133-10811165)
chr3 (44-80)||(40419676-40419712)
chr3 (44-80)||(47392462-47392498)
chr3 (44-80)||(48789328-48789364)
chr3 (44-80)||(48789613-48789649)
chr3 (51-87)||(49840104-49840140)
[»] chr7 (6 HSPs)
chr7 (39-80)||(46880898-46880939)
chr7 (46-87)||(27421915-27421957)
chr7 (46-80)||(38662814-38662848)
chr7 (43-80)||(31487190-31487227)
chr7 (44-80)||(3343364-3343400)
chr7 (43-87)||(6353725-6353769)
[»] scaffold0160 (1 HSPs)
scaffold0160 (43-225)||(26421-26602)
[»] chr8 (10 HSPs)
chr8 (41-80)||(4312546-4312585)
chr8 (41-86)||(5849593-5849639)
chr8 (42-76)||(33605116-33605150)
chr8 (42-87)||(3950109-3950154)
chr8 (39-80)||(7010681-7010722)
chr8 (40-73)||(16487607-16487640)
chr8 (43-80)||(20852919-20852956)
chr8 (40-73)||(42569758-42569791)
chr8 (41-69)||(17775474-17775502)
chr8 (44-80)||(40074858-40074894)
[»] chr2 (8 HSPs)
chr2 (33-80)||(3924159-3924206)
chr2 (42-80)||(9634470-9634508)
chr2 (46-80)||(32869829-32869863)
chr2 (42-80)||(41353531-41353569)
chr2 (38-76)||(44530720-44530758)
chr2 (43-80)||(5095987-5096024)
chr2 (40-69)||(9207587-9207616)
chr2 (32-69)||(22353209-22353246)
[»] scaffold0257 (1 HSPs)
scaffold0257 (42-76)||(23980-24014)
[»] scaffold0432 (1 HSPs)
scaffold0432 (41-69)||(6565-6593)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 32926226 - 32926560
Alignment:
Q  10 aagaatataaagttattttgagatttctaaatagagaaatgatatttgaacaatcattttatgataa-ttttgtgataannnnnnnctctcatactcaca 108  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||    
T  32926226 aagaatatcaagttattttgggatttctaaatagtgaaatgatatttgaacaatcattttatgataacttttgtgataatttttt-ctctcatactcaca 32926324  T
Q  109 cgttatattcttaatttctctctcaattgctttaattttgtgtcaacctttacatttctttatatattttagttatctaataagttgtctttaaaagtgg 208  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||||||| || | |||||||||||    
T  32926325 cgttatattcttaatttctct-tcaattgctttgattttgtatcaacccttacatttttttatatattttagttgtctaataaattat-tttaaaagtgg 32926422  T
Q  209 attttcaaataacattcgtctccaaataatccgcacaacagacattcaaactcaatatgtagatgcctagttatcttcatccaaagagggttcggatata 308  Q
     |||||||||||||||| ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32926423 gttttcaaataacattcctctccaaataatccgcacaacagacatt-----tcaatatgtagatgcctagttatcttcatccaaagagggttcggatata 32926517  T
Q  309 tttgtttagagctaacattaggcctccacacatacgttggacc 351  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  32926518 tttgtttagtgctaacattaggcctccacacatacgttggacc 32926560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 48679025 - 48678980
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||||    
T  48679025 agagaaatgatatttgtacaatcattttatgacaattttttgataa 48678980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 5485897 - 5485941
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    ||||||||||||||||| | |||||||||||||| ||||||||||    
T  5485897 gagaaatgatatttgaatattcattttatgataaatttgtgataa 5485941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 611696 - 611658
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  611696 agagaaatgatatttgaacaatcattttgggataatttt 611658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 8828193 - 8828152
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataattttgtga 84  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  8828193 agagaaatgatatttgaacaatcatttt-tgacaattttgtga 8828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 26159440 - 26159478
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  26159440 agagaaatgatatttgaacaatcattttttgacaatttt 26159478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 33125395 - 33125357
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  33125395 agagaaatgatatttgaacatccattttatgataatttt 33125357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 35026889 - 35026927
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataattt 79  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  35026889 tagagaaatgatatttgtataatcattttatgataattt 35026927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 43755750 - 43755712
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  43755750 agagaaatgatatttgtacaaccattttatgataatttt 43755712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 5771819 - 5771782
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  5771819 gagaaatgatatttgaacaatcactttttgataatttt 5771782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 25586551 - 25586592
Alignment:
Q  39 aatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||| ||||||||||| |||||||||| |||||||||||    
T  25586551 aatagagtaatgatatttgtacaatcatttgatgataatttt 25586592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 45333567 - 45333596
Alignment:
Q  40 atagagaaatgatatttgaacaatcatttt 69  Q
    ||||||||||||||||||||||||||||||    
T  45333567 atagagaaatgatatttgaacaatcatttt 45333596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 46543513 - 46543468
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataat-tttgtgataa 87  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||    
T  46543513 gagaaatgatatttgaacatccattttatgataatctttgtgataa 46543468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 49699823 - 49699786
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  49699823 gagaaatgatatttgtacaaccattttatgataatttt 49699786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 19442504 - 19442532
Alignment:
Q  41 tagagaaatgatatttgaacaatcatttt 69  Q
    |||||||||||||||||||||||||||||    
T  19442504 tagagaaatgatatttgaacaatcatttt 19442532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 34254424 - 34254392
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatga 73  Q
    ||||||||||||||||||||| |||||||||||    
T  34254424 tagagaaatgatatttgaacattcattttatga 34254392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 39757181 - 39757217
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||  ||||||||||||||||    
T  39757181 agaaatgatatttgaacaactattttatgataatttt 39757217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 39762535 - 39762571
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||  ||||||||||||||||    
T  39762535 agaaatgatatttgaacaactattttatgataatttt 39762571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 41677397 - 41677369
Alignment:
Q  41 tagagaaatgatatttgaacaatcatttt 69  Q
    |||||||||||||||||||||||||||||    
T  41677397 tagagaaatgatatttgaacaatcatttt 41677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 21418329 - 21418244
Alignment:
Q  144 ttttgtgtcaacctttacatttctttatatattttagttatctaataagttgtctttaaaagtggattttcaaataacattcgtct 229  Q
    ||||||||||| | |||||||||||| |||||||| |||||| ||||| || | || |||||||| | ||||||||||||| ||||    
T  21418329 ttttgtgtcaatccttacatttctttgtatattttggttatccaataaattattttaaaaagtggttattcaaataacatttgtct 21418244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 30714669 - 30714706
Alignment:
Q  32 atttctaaatagagaaatgatatttgaacaatcatttt 69  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30714669 atttctaaatagagaaatgatatttgtacaatcatttt 30714706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 2242099 - 2242056
Alignment:
Q  37 taaatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||    
T  2242099 taaaaagagaaatgatatttgaacaatcattttttgacaatttt 2242056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 34442021 - 34441954
Alignment:
Q  158 ttacatttctttatatattttagttatctaataagttgtctttaaaagtggattttcaaataacattc 225  Q
    ||||||||||||||| |||||  || || ||||||||||||| |||| ||||| ||||||||| ||||    
T  34442021 ttacatttctttatacattttgattgtccaataagttgtcttaaaaattggatgttcaaataatattc 34441954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 31713379 - 31713345
Alignment:
Q  46 aaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||| ||||||||||||||||||||||||    
T  31713379 aaatgatattcgaacaatcattttatgataatttt 31713345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 32253779 - 32253824
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    |||||||||||||||| |||| || ||| |||||||||||||||||    
T  32253779 agagaaatgatatttgtacaaccactttttgataattttgtgataa 32253824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 21388389 - 21388309
Alignment:
Q  144 ttttgtgtcaacctttacatttctttatatattttagttatctaataagttgtctttaaaagtggattttcaaataacatt 224  Q
    ||||||||||| | |||||||||||||||||||||  || |  ||||| || | || |||||||| | |||||||||||||    
T  21388389 ttttgtgtcaatccttacatttctttatatattttgattgtgcaataaattattttaaaaagtggttgttcaaataacatt 21388309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 27612876 - 27612912
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  27612876 agaaatgatatttgaacaattattttataataatttt 27612912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 32912037 - 32912075
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  32912037 agagaaatgatatttgaacattcattttatgataatttt 32912075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 20478468 - 20478548
Alignment:
Q  144 ttttgtgtcaacctttacatttctttatatattttagttatctaataagttgtctttaaaagtggattttcaaataacatt 224  Q
    ||||||||||  | |||||||||||| |||||||| ||| || |||||||||| |  |||||||| ||||| |||||||||    
T  20478468 ttttgtgtcagtcattacatttctttgtatattttggttgtccaataagttgtttcaaaaagtggtttttcgaataacatt 20478548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 19982063 - 19982020
Alignment:
Q  37 taaatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||    
T  19982063 taaaaagagaaatgatattttaacaatcattttttgataatttt 19982020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 27546062 - 27546093
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatga 73  Q
    ||||||||||||||||||||||||||||||||    
T  27546062 agagaaatgatatttgaacaatcattttatga 27546093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 38704270 - 38704231
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  38704270 tagagaaatgatatttgaacatccattttatgataatttt 38704231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 18511868 - 18511830
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  18511868 agagaaatgatatttgaacattcattttgtgataatttt 18511830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 19840058 - 19840020
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  19840058 agagaaatgatatttgaacattcattttatgacaatttt 19840020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 33958332 - 33958294
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  33958332 agagaaatgatatttgaacaatcatttttggataatttt 33958294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 42509671 - 42509756
Alignment:
Q  111 ttatattcttaatttctctctcaattgctttaattttgt--gtcaacctttacatttctttatatattttagttatctaataagtt 194  Q
    ||||||||||| ||||||| || |||| ||||||||| |  |||||  |||||||||||||  ||||||| ||| |||||||||||    
T  42509671 ttatattcttactttctctttccattgttttaattttttatgtcaatatttacatttctttgcatattttggttgtctaataagtt 42509756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 8681843 - 8681880
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  8681843 gagaaatgatatttgtacaatcattttttgataatttt 8681880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 25345336 - 25345377
Alignment:
Q  39 aatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||| ||||| | ||||||||||||||    
T  25345336 aatagagaaatgatatttgtacaattaatttatgataatttt 25345377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 33901963 - 33901930
Alignment:
Q  47 aatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||| |||||||||||||||||    
T  33901963 aatgatatttgaacaaccattttatgataatttt 33901930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 34124621 - 34124658
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||  |||||||||||||||||    
T  34124621 gagaaatgatatttgaacatccattttatgataatttt 34124658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 189776 - 189732
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataa-ttttgtga 84  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||    
T  189776 tagagaaatgatatttgaacatccattttatgataacttttgtga 189732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 17097875 - 17097831
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataa-ttttgtga 84  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||    
T  17097875 tagagaaatgatatttgaacaaccattttttgataacttttgtga 17097831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 34400619 - 34400655
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  34400619 agaaatgatatttgtacaatcattttatgacaatttt 34400655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 35650007 - 35649950
Alignment:
Q  95 ctctcatactcacacgttatattcttaatttctctctcaattgctttaattttgtgtcaa 154  Q
    ||||||||||||||  |||| || ||| |||||||||| ||||| |||||||||||||||    
T  35650007 ctctcatactcaca--ttatgtttttactttctctctctattgcattaattttgtgtcaa 35649950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 31804406 - 31804356
Alignment:
Q  37 taaatagagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  31804406 taaatagagaaatgatatttgtacaatcactttgtgataattttttgataa 31804356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 39158104 - 39158142
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  39158104 agagaaatgatatttgaacaatcattttttgataatttt 39158142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 56474841 - 56474809
Alignment:
Q  37 taaatagagaaatgatatttgaacaatcatttt 69  Q
    |||||||||||||||||||||||||||||||||    
T  56474841 taaatagagaaatgatatttgaacaatcatttt 56474809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 19672454 - 19672411
Alignment:
Q  33 tttctaaatagagaaatgatatttgaacaatcattttatgataa 76  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  19672454 tttctaaattgagaaattatatttgaacaaccattttatgataa 19672411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 50506391 - 50506430
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  50506391 tagagaaatgatatttgaacaaccattttttgataatttt 50506430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 54801560 - 54801521
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  54801560 tagagaaatgatatttgtacaatcattttattataatttt 54801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 19879776 - 19879810
Alignment:
Q  46 aaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||| ||||||||||||||||||||||    
T  19879776 aaatgatatttgtacaatcattttatgataatttt 19879810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 20381350 - 20381388
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  20381350 agagaaattatatttgaacaatcattttttgataatttt 20381388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 21392569 - 21392607
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  21392569 agagaaatgatatttgaacaatcattttgtaataatttt 21392607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 31559534 - 31559572
Alignment:
Q  39 aatagagaaatgatatttgaacaatcattttatgataat 77  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  31559534 aatagagaaatgatatttgtacaatcattttttgataat 31559572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 44626604 - 44626650
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataa-ttttgtgataa 87  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||    
T  44626604 agagaaatgatatttgaacaactattttatgataacttttgtgataa 44626650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 149556 - 149519
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  149556 gagaaatgatatttgaacaatcactttttgataatttt 149519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 2738339 - 2738302
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  2738339 gagaaatgatatttgaacaatcattttttgacaatttt 2738302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 13139148 - 13139185
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||  |||||||||||||||||    
T  13139148 gagaaatgatatttgaacatccattttatgataatttt 13139185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 30866353 - 30866386
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataa 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  30866353 gagaaatgatatttgtacaatcattttatgataa 30866386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 54921729 - 54921696
Alignment:
Q  47 aatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||| |||||||||||    
T  54921729 aatgatatttgaacaatcatttgatgataatttt 54921696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 29227317 - 29227277
Alignment:
Q  40 atagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  29227317 atagagaaatgatatttgaacaaccactttttgataatttt 29227277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 35332706 - 35332750
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    ||||||||||||||| |||| || |||||||||||||| ||||||    
T  35332706 gagaaatgatatttgtacaaccactttatgataattttttgataa 35332750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 40308438 - 40308478
Alignment:
Q  40 atagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||| |||||||||||| ||||||||||||| ||||||||    
T  40308438 atagaaaaatgatatttgtacaatcattttataataatttt 40308478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 35755983 - 35756021
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  35755983 agagaaatgatatttgaacaaccattttatgataatttt 35756021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 24095479 - 24095440
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  24095479 tagagaaatgatatttgaacatccattttatgataatttt 24095440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 42683825 - 42683864
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  42683825 tagagaaatgatatttgaacattcattttgtgataatttt 42683864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 39901590 - 39901628
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  39901590 agagaaatgatatttgtacaatcattttttgataatttt 39901628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 52727520 - 52727482
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  52727520 agagaaatgatatttgtacaatcactttatgataatttt 52727482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 53871097 - 53871055
Alignment:
Q  38 aaatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  53871097 aaataaagaaatgatatttgaacaaccattttatgacaatttt 53871055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 9753230 - 9753267
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  9753230 gagaaatgatatttgaacaatcattttgtgacaatttt 9753267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 52090011 - 52089970
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataattttgtga 84  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  52090011 gagaattgatatttaaacaatcattttataataattttgtga 52089970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 10811133 - 10811165
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatga 73  Q
    |||||||||||||||||||||| ||||||||||    
T  10811133 tagagaaatgatatttgaacaaccattttatga 10811165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 40419712 - 40419676
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  40419712 agaaatgatatttgtacaatcattttgtgataatttt 40419676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 47392498 - 47392462
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||  ||||||||||||||||    
T  47392498 agaaatgatatttgaacaactattttatgataatttt 47392462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 48789328 - 48789364
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  48789328 agaaatgatatttgaacaattattttctgataatttt 48789364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 48789613 - 48789649
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  48789613 agaaatgatatttgaacaattattttctgataatttt 48789649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 49840140 - 49840104
Alignment:
Q  51 atatttgaacaatcattttatgataattttgtgataa 87  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  49840140 atatttgtacaatcattttatgataattttgggataa 49840104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 46880898 - 46880939
Alignment:
Q  39 aatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  46880898 aatagagaaatgatatttgaacaaccattttttgataatttt 46880939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 27421957 - 27421915
Alignment:
Q  46 aaatgatatttgaacaatcattttatgat-aattttgtgataa 87  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  27421957 aaatgatatttcaacaatcattttatgataaattttgtgataa 27421915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 38662848 - 38662814
Alignment:
Q  46 aaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||||| |||||||||    
T  38662848 aaatgatatttgaacaatcattttaggataatttt 38662814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 31487190 - 31487227
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  31487190 gagaaatgatatttcaacaattattttatgataatttt 31487227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 3343400 - 3343364
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  3343400 agaaatgatatttgaacattcattttatgacaatttt 3343364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 6353725 - 6353769
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||||    
T  6353725 gagaaatgatatttgtacaaccattttttgacaattttgtgataa 6353769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 26421 - 26602
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataa-ttttgtgataannnnnnnctctcatactcacacgttatattcttaatttctctctcaattgcttt 141  Q
    |||||||||||||| ||||| | ||||||||||| |||||||| ||        ||| |||||||||  ||||| | |||||||||||||  |||| |||    
T  26421 gagaaatgatatttaaacaaccgttttatgataacttttgtgacaattttttt-tcttatactcaca--ttatacttttaatttctctcttcattgtttt 26517  T
Q  142 aattttg-tgtcaacctttacatttctttatatattttagttatctaataagttgtctttaaaagtggattttcaaataacattc 225  Q
     |||||  |||||| | |||||||| ||| |||||||| |||||| ||||||||||||  ||||||||   || |||||||||||    
T  26518 gatttttatgtcaatccttacatttgtttgtatattttggttatccaataagttgtctaaaaaagtggtggtttaaataacattc 26602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 4312546 - 4312585
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  4312546 tagagaaatgatatttgaacaactattttatgataatttt 4312585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 5849639 - 5849593
Alignment:
Q  41 tagagaaatgatatttgaacaatcattttatgataa-ttttgtgata 86  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||||    
T  5849639 tagagaaatgatatttgaacaaccattttttgataacttttgtgata 5849593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 33605150 - 33605116
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataa 76  Q
    ||||||||||||||||||||| |||||||||||||    
T  33605150 agagaaatgatatttgaacaaccattttatgataa 33605116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 3950109 - 3950154
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataattttgtgataa 87  Q
    |||||||||||||||| |||| |||||||| |||||||| ||||||    
T  3950109 agagaaatgatatttgtacaaccattttattataattttttgataa 3950154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 7010681 - 7010722
Alignment:
Q  39 aatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||    
T  7010681 aatagagaaatgatatttgtacaatcattttttgacaatttt 7010722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 16487607 - 16487640
Alignment:
Q  40 atagagaaatgatatttgaacaatcattttatga 73  Q
    ||||||||||||||||||||||| ||||||||||    
T  16487607 atagagaaatgatatttgaacaaccattttatga 16487640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 20852919 - 20852956
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  20852919 gagaaatgatatttgtacaaccattttatgataatttt 20852956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 42569791 - 42569758
Alignment:
Q  40 atagagaaatgatatttgaacaatcattttatga 73  Q
    |||||||||||||||||||||| |||||||||||    
T  42569791 atagagaaatgatatttgaacattcattttatga 42569758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 17775502 - 17775474
Alignment:
Q  41 tagagaaatgatatttgaacaatcatttt 69  Q
    |||||||||||||||||||||||||||||    
T  17775502 tagagaaatgatatttgaacaatcatttt 17775474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 40074858 - 40074894
Alignment:
Q  44 agaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||||||  ||||||||||||||||    
T  40074858 agaaatgatatttgaacaactattttatgataatttt 40074894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 3924206 - 3924159
Alignment:
Q  33 tttctaaatagagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||| ||| ||||||||||| ||||| ||||||||||||||||    
T  3924206 tttctaaattgagtaatgatatttgtacaattattttatgataatttt 3924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 9634508 - 9634470
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  9634508 agagaaatgatatttgaacatccattttatgataatttt 9634470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 32869829 - 32869863
Alignment:
Q  46 aaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||| ||||||||||||||||||    
T  32869829 aaatgatatttgaacattcattttatgataatttt 32869863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 41353569 - 41353531
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataatttt 80  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  41353569 agagaaatgatatttgtacaatcaatttatgataatttt 41353531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 44530758 - 44530720
Alignment:
Q  38 aaatagagaaatgatatttgaacaatcattttatgataa 76  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  44530758 aaataaagaaatgatatttgaacaattattttatgataa 44530720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 5096024 - 5095987
Alignment:
Q  43 gagaaatgatatttgaacaatcattttatgataatttt 80  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  5096024 gagaaatgatatttgtacaatcattttgtgataatttt 5095987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 9207587 - 9207616
Alignment:
Q  40 atagagaaatgatatttgaacaatcatttt 69  Q
    ||||||||||||||||||||||||||||||    
T  9207587 atagagaaatgatatttgaacaatcatttt 9207616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 22353246 - 22353209
Alignment:
Q  32 atttctaaatagagaaatgatatttgaacaatcatttt 69  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  22353246 atttccaaatagagaaatgatatttgtacaatcatttt 22353209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 23980 - 24014
Alignment:
Q  42 agagaaatgatatttgaacaatcattttatgataa 76  Q
    ||||||||||||||||||||| |||||||||||||    
T  23980 agagaaatgatatttgaacaaccattttatgataa 24014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 6593 - 6565
Alignment:
Q  41 tagagaaatgatatttgaacaatcatttt 69  Q
    |||||||||||||||||||||||||||||    
T  6593 tagagaaatgatatttgaacaatcatttt 6565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University