View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6170_high_9 (Length: 365)
Name: NF6170_high_9
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 15712699 - 15713038
Alignment:
| Q |
11 |
aatgaatcatctcttagaacatgaccatgaaaagctagaggagtggtgctcaacgtcgattcacctaccaaggaagcaagtaagtttgaataataatgac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15712699 |
aatgaatcatctcttagaacatgaccatgaaaagctagaggagtggtgctcaacgtcgattcacctaccaaggaagctagtaagtttgaataataatgac |
15712798 |
T |
|
| Q |
111 |
ttattaccaaagataagtttatgaaattgtgatt---caagaactttaaacatacgtgtaataactcgttataattaccttgacttaacctattattcct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15712799 |
ttattaccaaagataagtttatgaaattgtgattattcaagaactttaaacatacgcgtaataactcgttataattaccttgacttaacctattattcct |
15712898 |
T |
|
| Q |
208 |
tctccatgagtagaagacacaacaaattaatagagctactgccattagtacacttactaagatgatggtcaaggnnnnnnngttacttgaaccttcctgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15712899 |
tctccatgagtagaagacacaacaaattaatagagctactgccattagtacacttactaagatgatggtcaaggtttttttgttacttgaaccttcctgc |
15712998 |
T |
|
| Q |
308 |
ttggctgcaaaaatgacatgtgttaaaatgatgcatttct |
347 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15712999 |
ttggctgcaaaaatgacatgtattaaaatgatgcatttct |
15713038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 345
Target Start/End: Original strand, 15698438 - 15698581
Alignment:
| Q |
202 |
attccttctccatgagtagaagacacaacaaattaatagagctactgccattagtacacttactaagatgatggtcaaggnnnnnnngttacttgaacct |
301 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
15698438 |
attctttctccagtagtagtagacacaacaacataggagagctactgccattagtacacttactaagatgatgatcaaggtttttttgttacttgcacct |
15698537 |
T |
|
| Q |
302 |
tcctgcttggctgcaaaaatgacatgtgttaaaatgatgcattt |
345 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
15698538 |
tcctgcttggctgcaaaagtaacatggattaaaatgatgcattt |
15698581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 15814326 - 15814385
Alignment:
| Q |
222 |
agacacaacaaattaatagagctactgccattagtacacttactaagatgatggtcaagg |
281 |
Q |
| |
|
||||| ||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
15814326 |
agacagaacaacttagtagagctactgccaccagtacacttactaagatgatgatcaagg |
15814385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University