View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_low_1 (Length: 593)
Name: NF6170_low_1
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 21621144 - 21621558
Alignment:
| Q |
12 |
atgaagatagatacctacatgagttttatatagatagaccttaaacttgacacttttgagatacttgtagattcatgtatgtaatcatacgattttagtc |
111 |
Q |
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| T |
21621144 |
atgaagatagatacttacatgagttttatatagatagaccctaaaattgacacttttgagatacttgtagattcatgtatgtaatcatacgattttagtc |
21621243 |
T |
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| Q |
112 |
acctgattaacttttggattttnnnnnnnn-gtttaaaatttaaagtcaaaatatgaatcatacgacaaaacattattatttgtcaaaagacccatttat |
210 |
Q |
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| T |
21621244 |
acctgattaacttttgaatttaaaaaaaaaagtttaaaatttaaagtcaaaatatgaatcatacgacaaaacattattttttgtcaaaagacccatttat |
21621343 |
T |
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| Q |
211 |
attctaaatatgttgattgaattgaattggtttacataaaataaaaagaaggtttcatcctaagaagaataatgtccacaaaacactttttaaggtgtaa |
310 |
Q |
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| T |
21621344 |
attataaatatgctgattgaattgaattggtttacataaaataaaaagaaggtttcatcctaagaagaataatgtctacaaaacactttttaaggtgtaa |
21621443 |
T |
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| Q |
311 |
agagtccacattagacaattacacaagagataatcttcacatatgaacatataaactaactattgtgaccgaattaaacctagaaaaattatcaatggac |
410 |
Q |
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| T |
21621444 |
agagtccacattagacaattacacaagagataatcttcacatatgaacatataaactaacttttgtgaccgaattaaacctagaaaaattatcaatggac |
21621543 |
T |
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| Q |
411 |
attcaacaccccatc |
425 |
Q |
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| T |
21621544 |
attcaacaccccatc |
21621558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 21621626 - 21621683
Alignment:
| Q |
493 |
aggtgtgaaacgaatattagaaaattaaggatgtttaaaattaaggatataatccggt |
550 |
Q |
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| T |
21621626 |
aggtgtgaaacaaatatttgaaaattaaggatgtttaaaattaaggatataattcggt |
21621683 |
T |
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