View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_low_14 (Length: 303)
Name: NF6170_low_14
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 12958950 - 12959173
Alignment:
| Q |
20 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12958950 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
12959049 |
T |
|
| Q |
120 |
aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta |
219 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12959050 |
aattgattctgaatcagtccttctgttcttttcaaagcgttacctcattaatattatccttaatttcgttcaacccaatttacatattatagtaatatta |
12959149 |
T |
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| Q |
220 |
aaggagacagtaaaaatgtccaac |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
12959150 |
aaggagacagtaaaaatgtccaac |
12959173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 37868290 - 37868513
Alignment:
| Q |
20 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
119 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37868290 |
gatgactcttgttgttggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
37868389 |
T |
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| Q |
120 |
aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta |
219 |
Q |
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| T |
37868390 |
aattgattatgaatcattccttctgttcttttcaaagcgttacctcattaatattatccttaatttcgttcaacccaatttacatattatagtaatatta |
37868489 |
T |
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| Q |
220 |
aaggagacagtaaaaatgtccaac |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
37868490 |
aaggagacagtaaaaatgtccaac |
37868513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 10367960 - 10367804
Alignment:
| Q |
20 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10367960 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatctaaatggataaattatgtgtgtttatattatgtttttgtat |
10367861 |
T |
|
| Q |
120 |
aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattat |
176 |
Q |
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| T |
10367860 |
aattgattttgaatcagtccttctgttcttttcaaagcgttacctcattaatattat |
10367804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 29739220 - 29738997
Alignment:
| Q |
20 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29739220 |
gatgactcttgttgttggaaacaactcgaatagctattcttcttcaatttacggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
29739121 |
T |
|
| Q |
120 |
aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta |
219 |
Q |
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|
|||||||| | ||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
29739120 |
aattgattttgaatcagtccttctgttcttttcaaagtgttacctcattaatattatccttaatttcgttcaacccaatttatatattatggtaatatta |
29739021 |
T |
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| Q |
220 |
aaggagacagtaaaaatgtccaac |
243 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
29739020 |
aaggagacggtaaaaatgtccaac |
29738997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 5421685 - 5421894
Alignment:
| Q |
20 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatattatgtttttgtat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5421685 |
gatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaatta--tgtgtttatattatgtttttgtat |
5421782 |
T |
|
| Q |
120 |
aattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatattatagtaatatta |
219 |
Q |
| |
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| |||||||| ||| | || ||||||||||||||||| ||| |||||||| |||||| | |||| |||||||||||||||||||||||||||| |
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| T |
5421783 |
agttgattctgaatcaatcattctgttcttttcaaagtgtt--------aatattatccttaatcttgttcgacccaatttacatattatagtaatatta |
5421874 |
T |
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| Q |
220 |
aaggagacagtaaaaatgtc |
239 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5421875 |
aaggagacagtaaaaatgtc |
5421894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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