View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6170_low_16 (Length: 264)

Name: NF6170_low_16
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6170_low_16
NF6170_low_16
[»] chr1 (5 HSPs)
chr1 (19-169)||(3616369-3616520)
chr1 (17-112)||(52077639-52077734)
chr1 (212-255)||(3616566-3616609)
chr1 (212-251)||(52077842-52077881)
chr1 (20-48)||(12666957-12666985)
[»] chr7 (2 HSPs)
chr7 (21-169)||(16756359-16756516)
chr7 (213-255)||(16756270-16756312)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 3616369 - 3616520
Alignment:
Q  19 ggatgaatttatgatggtggtgtgtgatgaatttgggagaagaagatatgaagattcctggagttgaaggaattgttggtgatgaaggaattctggaa-n 117  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||      
T  3616369 ggatgaatttatgatggcggtgtctgatgaatttgggagaagaagatatgaagattcctggagatgaaggaattgttggtgatgaaggaattctggaatt 3616468  T
Q  118 nnnnnnnnggaacgctgatatagatatgaggaagaagataagagataaacca 169  Q
            ||||||||||||||||| ||||||||||||||||||||||||||    
T  3616469 tttattttggaacgctgatatagatctgaggaagaagataagagataaacca 3616520  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 52077639 - 52077734
Alignment:
Q  17 agggatgaatttatgatggtggtgtgtgatgaatttgggagaagaagatatgaagattcctggagttgaaggaattgttggtgatgaaggaattct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  52077639 agggatgaatttatgatggtggtgtgtgatgaatttgggagaagaagatatgaagattcctggagacgaaggcattgttggtgatgaaggaattct 52077734  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 3616566 - 3616609
Alignment:
Q  212 ctgggtttattattaatagaaatcaatggtgatcatgatgatgt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3616566 ctgggtttattattaatagaaatcaatggtgatcatgatgatgt 3616609  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 52077842 - 52077881
Alignment:
Q  212 ctgggtttattattaatagaaatcaatggtgatcatgatg 251  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  52077842 ctgggtttattattaatagaaatcaatggtgatgatgatg 52077881  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 12666957 - 12666985
Alignment:
Q  20 gatgaatttatgatggtggtgtgtgatga 48  Q
    |||||||||||||||||||||||||||||    
T  12666957 gatgaatttatgatggtggtgtgtgatga 12666985  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 16756516 - 16756359
Alignment:
Q  21 atgaatttatgatggtggtgtgtgatgaattt--------gggagaagaagatatgaagattcctggagttgaaggaattgttggtgatgaaggaattct 112  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  16756516 atgaatttatgatggtggtgtgtgatgaatttatgaatttgggagaagaagatatgaagattcatggagatgaaggaattgttggtgatgaaggaattct 16756417  T
Q  113 ggaannnnnnnnngg-aacgctgatatagatatgaggaagaagataagagataaacca 169  Q
    | |          || ||||||||||||||||||||||||||||| ||||||||||||    
T  16756416 gaattttttttttggcaacgctgatatagatatgaggaagaagatgagagataaacca 16756359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 16756312 - 16756270
Alignment:
Q  213 tgggtttattattaatagaaatcaatggtgatcatgatgatgt 255  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  16756312 tgggtttattattaatagaaatcaatggtgatgatgatgatgt 16756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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