View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_low_17 (Length: 257)
Name: NF6170_low_17
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 43585061 - 43585282
Alignment:
| Q |
14 |
aaataaaaaggtagggagttgaattttgtcttcaacattatcctcttgtgagaatactggggctgatcttcatccccacattttctttaatcatatnnnn |
113 |
Q |
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| T |
43585061 |
aaataaaaaggtagggagttgaattttgtcttcaacattatcctcttgtgagaatactggggctgatcttcatccccacattttctttaatcatataaaa |
43585160 |
T |
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| Q |
114 |
nnntatcgcaccctctcaaatagtgagccacagtttgtatcctttgtttgattcctcaactcaatcaacacagaaaaaatagtagtagacagttgttcat |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585161 |
aaatatc------tctcaaatagtgagccacagtttgtatcctttgtttgattcctcaactcaatcaacacagaaaaaatagtagtagacagttgttcat |
43585254 |
T |
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| Q |
214 |
ccttagggttttccttctctcttcaaat |
241 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43585255 |
ccttagggttttccttctctcttcaaat |
43585282 |
T |
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