View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_low_22 (Length: 251)
Name: NF6170_low_22
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 52551610 - 52551370
Alignment:
| Q |
1 |
tgtcctatttgtgtttaacttatcctaaccactatatatacgagcttttaattcttcctaaaaaggaaattttgnnnnnnnacattaatgcgtaaatgta |
100 |
Q |
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| T |
52551610 |
tgtcctatttgtgtttaacttatcctaaccactatatatacgagcttttaattcttcctaaaaaggaaattttgtttttttacattaatgcgtaaatgta |
52551511 |
T |
|
| Q |
101 |
cttttagattttagttgctcataacaccaaagcatcacaatagaggaggtattcatattagtccattaaattatttacttttaaatcaatggttataatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52551510 |
cttttagattttagttgctcataacaccaaagcatcacaatagaggaggtattcatagtagtccattaaattatttacttttaaatcaatggttataatc |
52551411 |
T |
|
| Q |
201 |
ataattgtgcataataccactcactttttaagtcacctatg |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
52551410 |
ataattgtgcataataccactcactttttaagtctcctatg |
52551370 |
T |
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