View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6170_low_24 (Length: 229)
Name: NF6170_low_24
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 153819 - 153609
Alignment:
| Q |
1 |
taacatgtcaagacatataaatctcacttatataaggaaacatgagtagtggaagttctctagtgtggtagctccaactctggaatgtttgtattcgaaa |
100 |
Q |
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| T |
153819 |
taacatgtcaagacatataaatctcacttatataaggaaacatgagtagtggaagttctctagtgtggtagctccaactctggaatgtttgtattcgaaa |
153720 |
T |
|
| Q |
101 |
aataagtaacaaaacaaatagaagcctttgagaactgcaaggatgcaacgaaagtaaatatagaaacattttatcctctgcaactacttatgtcacattc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153719 |
aataagtaacaaaacaaatagaagcctttgaaaactgcaaggatgcaacgaaagtaaatatagaaacattttatcctctgcaactacttatgtcacattc |
153620 |
T |
|
| Q |
201 |
cttgtcattta |
211 |
Q |
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||||||||||| |
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| T |
153619 |
cttgtcattta |
153609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 148996 - 148900
Alignment:
| Q |
1 |
taacatgtcaagacatataaatctcacttatataaggaaacatgagtagtggaagttctctagtgtggtagctccaactctggaatgtttgtattcg |
97 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
148996 |
taacatctcaagacatataaatctcacttatataatgaaacatgagtggtggaagttctctagtgtggtagctccaactctagaatgtttgtattcg |
148900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 51167767 - 51167807
Alignment:
| Q |
139 |
aaggatgcaacgaaagtaaatatagaaacattttatcctct |
179 |
Q |
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|||||||||||||||| |||||||||| | ||||||||||| |
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| T |
51167767 |
aaggatgcaacgaaagcaaatatagaagccttttatcctct |
51167807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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